Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21314 | 5' | -52.3 | NC_004778.3 | + | 116313 | 0.7 | 0.861891 |
Target: 5'- cGCGucGCGuuG-GCGGG-GUGCGGCGg -3' miRNA: 3'- -CGUguUGUuuCaCGUCCaCACGCCGC- -5' |
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21314 | 5' | -52.3 | NC_004778.3 | + | 33173 | 0.69 | 0.884626 |
Target: 5'- aCGCGGCAAgGGUGCuGGaacGCGGCGa -3' miRNA: 3'- cGUGUUGUU-UCACGuCCacaCGCCGC- -5' |
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21314 | 5' | -52.3 | NC_004778.3 | + | 26888 | 0.68 | 0.923451 |
Target: 5'- cGCGCuGCAGGccGCGGcGUuUGCGGCGg -3' miRNA: 3'- -CGUGuUGUUUcaCGUC-CAcACGCCGC- -5' |
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21314 | 5' | -52.3 | NC_004778.3 | + | 41242 | 0.68 | 0.934336 |
Target: 5'- uGCACAaauGCGucGUGguGGUGUugGGCa -3' miRNA: 3'- -CGUGU---UGUuuCACguCCACAcgCCGc -5' |
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21314 | 5' | -52.3 | NC_004778.3 | + | 57168 | 0.67 | 0.953018 |
Target: 5'- uGCGCcACAAAGUGUAG----GCGGCa -3' miRNA: 3'- -CGUGuUGUUUCACGUCcacaCGCCGc -5' |
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21314 | 5' | -52.3 | NC_004778.3 | + | 101622 | 0.66 | 0.970839 |
Target: 5'- aGCGCAACGAccaugucagcGUGCAGGUuucuuggaacGUGUGGa- -3' miRNA: 3'- -CGUGUUGUUu---------CACGUCCA----------CACGCCgc -5' |
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21314 | 5' | -52.3 | NC_004778.3 | + | 98725 | 0.74 | 0.627433 |
Target: 5'- cUACAACAuugAAGUGUAuaUGUGCGGCGa -3' miRNA: 3'- cGUGUUGU---UUCACGUccACACGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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