Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21314 | 5' | -52.3 | NC_004778.3 | + | 49306 | 0.69 | 0.898579 |
Target: 5'- aGCGCGGCGcGGUcauuggacGCGGcgccgcacaacGUGUGCGGCa -3' miRNA: 3'- -CGUGUUGUuUCA--------CGUC-----------CACACGCCGc -5' |
|||||||
21314 | 5' | -52.3 | NC_004778.3 | + | 34179 | 0.68 | 0.917619 |
Target: 5'- uGCGCAGCA---UGCAGGacgUGcUGUGGCu -3' miRNA: 3'- -CGUGUUGUuucACGUCC---AC-ACGCCGc -5' |
|||||||
21314 | 5' | -52.3 | NC_004778.3 | + | 118568 | 0.67 | 0.937901 |
Target: 5'- gGCACAGCAAAuuuaaaacacccacGUccuGguGGcggGUGCGGCa -3' miRNA: 3'- -CGUGUUGUUU--------------CA---CguCCa--CACGCCGc -5' |
|||||||
21314 | 5' | -52.3 | NC_004778.3 | + | 65758 | 0.67 | 0.93939 |
Target: 5'- gGCGCAGCGAGc--CGGGcgGUGaCGGCGa -3' miRNA: 3'- -CGUGUUGUUUcacGUCCa-CAC-GCCGC- -5' |
|||||||
21314 | 5' | -52.3 | NC_004778.3 | + | 25076 | 0.67 | 0.958607 |
Target: 5'- cGCGCAGCuucuaucgcauauuuGGGGUGCgcGGGUG-GCGGa- -3' miRNA: 3'- -CGUGUUG---------------UUUCACG--UCCACaCGCCgc -5' |
|||||||
21314 | 5' | -52.3 | NC_004778.3 | + | 102036 | 0.66 | 0.965772 |
Target: 5'- gGCGCcgccuaAACAAAGUGaCcaguguaaagaaucaAGGcaUGUGCGGCGc -3' miRNA: 3'- -CGUG------UUGUUUCAC-G---------------UCC--ACACGCCGC- -5' |
|||||||
21314 | 5' | -52.3 | NC_004778.3 | + | 48064 | 1.11 | 0.003772 |
Target: 5'- cGCACAACAAAGUGCAGGUGUGCGGCGc -3' miRNA: 3'- -CGUGUUGUUUCACGUCCACACGCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home