miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21315 5' -55.9 NC_004778.3 + 26852 0.66 0.891505
Target:  5'- gCGCGCUGCGuuuCGCguuGAACAaaaaagacuauGCGCg -3'
miRNA:   3'- -GCGUGACGCcc-GCGauuCUUGU-----------CGCG- -5'
21315 5' -55.9 NC_004778.3 + 34307 0.66 0.891505
Target:  5'- aGCAagUGCcGGCGCgugcuGGAACuGGUGCa -3'
miRNA:   3'- gCGUg-ACGcCCGCGau---UCUUG-UCGCG- -5'
21315 5' -55.9 NC_004778.3 + 100493 0.66 0.891505
Target:  5'- cCGCGCaaaauuauUGUGGGCGUUGccauGuACGGcCGCg -3'
miRNA:   3'- -GCGUG--------ACGCCCGCGAUu---CuUGUC-GCG- -5'
21315 5' -55.9 NC_004778.3 + 97165 0.66 0.891505
Target:  5'- uGCAUUGCuGGGCGUU------GGCGCu -3'
miRNA:   3'- gCGUGACG-CCCGCGAuucuugUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 28751 0.66 0.891505
Target:  5'- gCGCAC-GCGcaaacaGCGCcGAGAGCuucGGCGCc -3'
miRNA:   3'- -GCGUGaCGCc-----CGCGaUUCUUG---UCGCG- -5'
21315 5' -55.9 NC_004778.3 + 60414 0.66 0.890824
Target:  5'- uGgACgaaGCGGGCGUaGAGAugGaacgcccGCGCa -3'
miRNA:   3'- gCgUGa--CGCCCGCGaUUCUugU-------CGCG- -5'
21315 5' -55.9 NC_004778.3 + 18805 0.66 0.884583
Target:  5'- gGCAacuuucUUGgGGGCGgUAG--GCGGCGCg -3'
miRNA:   3'- gCGU------GACgCCCGCgAUUcuUGUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 118774 0.66 0.884583
Target:  5'- -aCGCUuCGGGCGCggcgcGGcCGGCGCg -3'
miRNA:   3'- gcGUGAcGCCCGCGauu--CUuGUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 42471 0.66 0.884583
Target:  5'- uGCAgaauUUGUuuggaaacguuGGGgGUUGAGGGCGGCGUg -3'
miRNA:   3'- gCGU----GACG-----------CCCgCGAUUCUUGUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 121748 0.66 0.883878
Target:  5'- aGCGacccguUUGCGGGuCGCUGaugcccuGGAACAcguuacggauGCGCg -3'
miRNA:   3'- gCGU------GACGCCC-GCGAU-------UCUUGU----------CGCG- -5'
21315 5' -55.9 NC_004778.3 + 17015 0.66 0.87743
Target:  5'- uGCACgUGCGcGGCGUuuuUAAGuGCAgaugugcaaaauGCGCa -3'
miRNA:   3'- gCGUG-ACGC-CCGCG---AUUCuUGU------------CGCG- -5'
21315 5' -55.9 NC_004778.3 + 34437 0.66 0.876702
Target:  5'- cCGUACUGCuguacacGGGCacGCUGcgcgucGAGgAGCGCa -3'
miRNA:   3'- -GCGUGACG-------CCCG--CGAUu-----CUUgUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 58586 0.66 0.875972
Target:  5'- uGCACaGCaGGGCGCaaaagguuuuGGAC-GCGCg -3'
miRNA:   3'- gCGUGaCG-CCCGCGauu-------CUUGuCGCG- -5'
21315 5' -55.9 NC_004778.3 + 124285 0.66 0.875239
Target:  5'- gCGCGCUucaagaaugcugaaGCGcGGCGCcggcgUGGGcACGGCGUc -3'
miRNA:   3'- -GCGUGA--------------CGC-CCGCG-----AUUCuUGUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 76384 0.66 0.873029
Target:  5'- gGCACUGUuucaaGGGCGUUAAcccuuacauuuugcuGGGCcaguacuuuGGCGCa -3'
miRNA:   3'- gCGUGACG-----CCCGCGAUU---------------CUUG---------UCGCG- -5'
21315 5' -55.9 NC_004778.3 + 70310 0.66 0.870051
Target:  5'- uCGCGCUGUcgagcaauGuGGUGUagggUAAGcACGGCGCg -3'
miRNA:   3'- -GCGUGACG--------C-CCGCG----AUUCuUGUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 1668 0.66 0.870051
Target:  5'- gGCACcuucgGUuuGGGUGCggccAGCAGCGCg -3'
miRNA:   3'- gCGUGa----CG--CCCGCGauucUUGUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 57430 0.66 0.870051
Target:  5'- aGCugUGUuucGCGC-AAGAuuaGCGGCGCg -3'
miRNA:   3'- gCGugACGcc-CGCGaUUCU---UGUCGCG- -5'
21315 5' -55.9 NC_004778.3 + 28853 0.66 0.870051
Target:  5'- aGCGCUGCaGcGaGCGCUAuuguuggccGGAcgGCAGuCGCu -3'
miRNA:   3'- gCGUGACG-C-C-CGCGAU---------UCU--UGUC-GCG- -5'
21315 5' -55.9 NC_004778.3 + 96756 0.66 0.862452
Target:  5'- uCGCGCUaGCGGccgccGCGCUGGcuAGCAGgGUg -3'
miRNA:   3'- -GCGUGA-CGCC-----CGCGAUUc-UUGUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.