miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21316 3' -56.8 NC_004778.3 + 33112 0.66 0.820507
Target:  5'- cGaCGC-GGCcGCAcAGCCAcgcGGCGGUg -3'
miRNA:   3'- aC-GCGaCCGaCGUuUCGGUa--CCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 43261 0.66 0.820507
Target:  5'- aGCGCUuGC-GCAGcAGCCGccGGUAGUa -3'
miRNA:   3'- aCGCGAcCGaCGUU-UCGGUa-CCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 12662 0.66 0.811597
Target:  5'- gGCGCUaccGGCaUGgGAGGCgggauaggUAUGGCGGUu -3'
miRNA:   3'- aCGCGA---CCG-ACgUUUCG--------GUACCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 29170 0.66 0.811597
Target:  5'- aGCGCgugacGCUGCcacGGGUCGUcgcucGGCAGCc -3'
miRNA:   3'- aCGCGac---CGACGu--UUCGGUA-----CCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 63490 0.66 0.811597
Target:  5'- gGCGCgGGCggauucggGCucauGCUgcGGCGGCg -3'
miRNA:   3'- aCGCGaCCGa-------CGuuu-CGGuaCCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 80647 0.66 0.811597
Target:  5'- cUGCGCgacuugGGCUGCGugcuGGUCcuGUGGUcGUa -3'
miRNA:   3'- -ACGCGa-----CCGACGUu---UCGG--UACCGuCG- -5'
21316 3' -56.8 NC_004778.3 + 16636 0.66 0.811597
Target:  5'- gGCGUUGGCaaacggUGUAGAuGUcugCAUGaGCAGCg -3'
miRNA:   3'- aCGCGACCG------ACGUUU-CG---GUAC-CGUCG- -5'
21316 3' -56.8 NC_004778.3 + 38932 0.66 0.783871
Target:  5'- aGCGCUGcGCgUGCGGAucGgCGUGGUcGCc -3'
miRNA:   3'- aCGCGAC-CG-ACGUUU--CgGUACCGuCG- -5'
21316 3' -56.8 NC_004778.3 + 74256 0.66 0.774328
Target:  5'- uUGUGCUGG-UGCAcgGGGUCGUuguccaGCAGCg -3'
miRNA:   3'- -ACGCGACCgACGU--UUCGGUAc-----CGUCG- -5'
21316 3' -56.8 NC_004778.3 + 75766 0.67 0.76465
Target:  5'- gGCGCUGGCgGC-AAG-CAUGuGC-GCa -3'
miRNA:   3'- aCGCGACCGaCGuUUCgGUAC-CGuCG- -5'
21316 3' -56.8 NC_004778.3 + 25102 0.67 0.76465
Target:  5'- gUGCGCgGGUgGCGGAGag--GGCAGUu -3'
miRNA:   3'- -ACGCGaCCGaCGUUUCgguaCCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 56172 0.67 0.761723
Target:  5'- aUGCGCUGGCUGCA---UC-UGGUuuuaacaaaauuuaAGCu -3'
miRNA:   3'- -ACGCGACCGACGUuucGGuACCG--------------UCG- -5'
21316 3' -56.8 NC_004778.3 + 82948 0.67 0.754849
Target:  5'- aUGCGCuUGuGCacaucgGUGAcGCuCAUGGCGGCg -3'
miRNA:   3'- -ACGCG-AC-CGa-----CGUUuCG-GUACCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 93168 0.67 0.748912
Target:  5'- cUGCGUuggGGCUGCugcgcguucacgcGGCC--GGCGGCg -3'
miRNA:   3'- -ACGCGa--CCGACGuu-----------UCGGuaCCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 71205 0.67 0.744932
Target:  5'- gGCGUUGGCgaggGUGucGCCGagGGCguaGGCg -3'
miRNA:   3'- aCGCGACCGa---CGUuuCGGUa-CCG---UCG- -5'
21316 3' -56.8 NC_004778.3 + 25089 0.67 0.743935
Target:  5'- gGCGguuuggacaaCUGGgaGCAagaugacGAGCCGUGGCAa- -3'
miRNA:   3'- aCGC----------GACCgaCGU-------UUCGGUACCGUcg -5'
21316 3' -56.8 NC_004778.3 + 127397 0.67 0.734911
Target:  5'- aGCGCUGGauaGCGcgcuaguGGCCAauauaguacGGCAGCu -3'
miRNA:   3'- aCGCGACCga-CGUu------UCGGUa--------CCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 61896 0.67 0.728853
Target:  5'- cGCGCUcugcguuaaaugaacGGCcgGCGAauuaauGGCguUGGCGGCc -3'
miRNA:   3'- aCGCGA---------------CCGa-CGUU------UCGguACCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 112392 0.67 0.724796
Target:  5'- cGCGC-GGUcGCGcAGCUuaGGCGGCa -3'
miRNA:   3'- aCGCGaCCGaCGUuUCGGuaCCGUCG- -5'
21316 3' -56.8 NC_004778.3 + 114363 0.67 0.714597
Target:  5'- cUGCGCgccGCggGCGAGGCCGgcccuUGcGUAGCa -3'
miRNA:   3'- -ACGCGac-CGa-CGUUUCGGU-----AC-CGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.