miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21316 5' -55.1 NC_004778.3 + 111561 0.66 0.896228
Target:  5'- -cGUUGA-GCUG-GCGAcCGGGCGCGc -3'
miRNA:   3'- guCAACUgCGACgCGUU-GCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 32823 0.66 0.889341
Target:  5'- gCAGcUGcCGCgGCGCGugGuGCGUAa -3'
miRNA:   3'- -GUCaACuGCGaCGCGUugCuCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 84721 0.66 0.889341
Target:  5'- cCAGuUUGGCGaUGCGUAACGAGUucuGCu- -3'
miRNA:   3'- -GUC-AACUGCgACGCGUUGCUCG---CGua -5'
21316 5' -55.1 NC_004778.3 + 106454 0.66 0.889341
Target:  5'- gGGcUGGgGCUGCgGCGggcACGGGCGCu- -3'
miRNA:   3'- gUCaACUgCGACG-CGU---UGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 88075 0.66 0.889341
Target:  5'- aCAG-UGGCuGUUGCGCAuGCGAuGUGCGa -3'
miRNA:   3'- -GUCaACUG-CGACGCGU-UGCU-CGCGUa -5'
21316 5' -55.1 NC_004778.3 + 61788 0.66 0.889341
Target:  5'- -cGUUGGCGC-GCGCuggcuGCGcGGCGCc- -3'
miRNA:   3'- guCAACUGCGaCGCGu----UGC-UCGCGua -5'
21316 5' -55.1 NC_004778.3 + 8780 0.66 0.885091
Target:  5'- aCAuUUGGCGCaGCagcuucagcggcgagGCGGCGGGCGCGc -3'
miRNA:   3'- -GUcAACUGCGaCG---------------CGUUGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 10720 0.66 0.88221
Target:  5'- uGGUUGGaccgcuguuCGCUGCGCGcuccGCGGGCuGCc- -3'
miRNA:   3'- gUCAACU---------GCGACGCGU----UGCUCG-CGua -5'
21316 5' -55.1 NC_004778.3 + 90670 0.66 0.88221
Target:  5'- gCGGUcGACGCUGCGUAcuucuCG-GCGUg- -3'
miRNA:   3'- -GUCAaCUGCGACGCGUu----GCuCGCGua -5'
21316 5' -55.1 NC_004778.3 + 15860 0.66 0.88221
Target:  5'- --aUUGGCGCaucucGCGCAGC-AGCGCGc -3'
miRNA:   3'- gucAACUGCGa----CGCGUUGcUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 28893 0.66 0.88221
Target:  5'- -uGUUuGCGCgUGCGCGAUGAaCGCGUg -3'
miRNA:   3'- guCAAcUGCG-ACGCGUUGCUcGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 12054 0.66 0.88221
Target:  5'- gCAGUUGGCGCgcuUGCAACGccgguugcaAGCGUg- -3'
miRNA:   3'- -GUCAACUGCGac-GCGUUGC---------UCGCGua -5'
21316 5' -55.1 NC_004778.3 + 116823 0.66 0.88221
Target:  5'- gCGGUUGACagacagaauGCugagaaUGCGCAGuuUGGGCGCGUa -3'
miRNA:   3'- -GUCAACUG---------CG------ACGCGUU--GCUCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 122551 0.66 0.859416
Target:  5'- aGGUcGGCGCUGaCGCAcGCGA-CGCAc -3'
miRNA:   3'- gUCAaCUGCGAC-GCGU-UGCUcGCGUa -5'
21316 5' -55.1 NC_004778.3 + 57575 0.66 0.859416
Target:  5'- ----gGACGg-GCGCGACGAGgGCGg -3'
miRNA:   3'- gucaaCUGCgaCGCGUUGCUCgCGUa -5'
21316 5' -55.1 NC_004778.3 + 114352 0.66 0.859416
Target:  5'- gCGGuUUGACcCUGCGCGccGCGGGCGa-- -3'
miRNA:   3'- -GUC-AACUGcGACGCGU--UGCUCGCgua -5'
21316 5' -55.1 NC_004778.3 + 49584 0.67 0.85137
Target:  5'- ----aGAgGCUGCGuCGGCG-GCGCAa -3'
miRNA:   3'- gucaaCUgCGACGC-GUUGCuCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 118203 0.67 0.85137
Target:  5'- --cUUGGCGCUcauCGACGAGCGCAg -3'
miRNA:   3'- gucAACUGCGAcgcGUUGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 91357 0.67 0.834648
Target:  5'- ----aGACGCUGUuCGACGAcaGCGCAa -3'
miRNA:   3'- gucaaCUGCGACGcGUUGCU--CGCGUa -5'
21316 5' -55.1 NC_004778.3 + 128731 0.67 0.831207
Target:  5'- aAGUUGGCGCUGCaGCAucaaucgaauuguCGAGCaacgGCGg -3'
miRNA:   3'- gUCAACUGCGACG-CGUu------------GCUCG----CGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.