miRNA display CGI

Results 41 - 48 of 48 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21316	5'	-55.1	NC_004778.3	+	106637	0.72	0.542146
	Target:  5'- -----aACGCUGCGCAGCGAGCuCAa -3' miRNA:   3'- gucaacUGCGACGCGUUGCUCGcGUa -5'
21316	5'	-55.1	NC_004778.3	+	61630	0.72	0.55247
	Target:  5'- --uUUGGCGCcGCGCAGCcAGCGCGc -3' miRNA:   3'- gucAACUGCGaCGCGUUGcUCGCGUa -5'
21316	5'	-55.1	NC_004778.3	+	57914	0.73	0.511586
	Target:  5'- ---gUGGCGCUugGCGCGGCGGGCGUc- -3' miRNA:   3'- gucaACUGCGA--CGCGUUGCUCGCGua -5'
21316	5'	-55.1	NC_004778.3	+	107953	0.75	0.415733
	Target:  5'- -cGUUGccaaACGCUaGCGCAGaCGAGCGCAa -3' miRNA:   3'- guCAAC----UGCGA-CGCGUU-GCUCGCGUa -5'
21316	5'	-55.1	NC_004778.3	+	121130	0.75	0.406759
	Target:  5'- aAGgcGGCGCcgGgGCAGCGGGCGCGg -3' miRNA:   3'- gUCaaCUGCGa-CgCGUUGCUCGCGUa -5'
21316	5'	-55.1	NC_004778.3	+	89874	0.75	0.380577
	Target:  5'- -uGUUGcCGCUGUGCAGCGuggugGGCGCAa -3' miRNA:   3'- guCAACuGCGACGCGUUGC-----UCGCGUa -5'
21316	5'	-55.1	NC_004778.3	+	90728	0.75	0.406759
	Target:  5'- gUAGUUaaaaucGGCGCUGCGCucggcGGCGAGCGCu- -3' miRNA:   3'- -GUCAA------CUGCGACGCG-----UUGCUCGCGua -5'
21316	5'	-55.1	NC_004778.3	+	57996	1.06	0.003912
	Target:  5'- uCAGUUGACGCUGCGCAACGAGCGCAUg -3' miRNA:   3'- -GUCAACUGCGACGCGUUGCUCGCGUA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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