miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21316 5' -55.1 NC_004778.3 + 57996 1.06 0.003912
Target:  5'- uCAGUUGACGCUGCGCAACGAGCGCAUg -3'
miRNA:   3'- -GUCAACUGCGACGCGUUGCUCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 89874 0.75 0.380577
Target:  5'- -uGUUGcCGCUGUGCAGCGuggugGGCGCAa -3'
miRNA:   3'- guCAACuGCGACGCGUUGC-----UCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 121130 0.75 0.406759
Target:  5'- aAGgcGGCGCcgGgGCAGCGGGCGCGg -3'
miRNA:   3'- gUCaaCUGCGa-CgCGUUGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 90728 0.75 0.406759
Target:  5'- gUAGUUaaaaucGGCGCUGCGCucggcGGCGAGCGCu- -3'
miRNA:   3'- -GUCAA------CUGCGACGCG-----UUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 107953 0.75 0.415733
Target:  5'- -cGUUGccaaACGCUaGCGCAGaCGAGCGCAa -3'
miRNA:   3'- guCAAC----UGCGA-CGCGUU-GCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 57914 0.73 0.511586
Target:  5'- ---gUGGCGCUugGCGCGGCGGGCGUc- -3'
miRNA:   3'- gucaACUGCGA--CGCGUUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 106637 0.72 0.542146
Target:  5'- -----aACGCUGCGCAGCGAGCuCAa -3'
miRNA:   3'- gucaacUGCGACGCGUUGCUCGcGUa -5'
21316 5' -55.1 NC_004778.3 + 61630 0.72 0.55247
Target:  5'- --uUUGGCGCcGCGCAGCcAGCGCGc -3'
miRNA:   3'- gucAACUGCGaCGCGUUGcUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 106787 0.72 0.573287
Target:  5'- -uGUUGAgcuCGCUGCGCAGCGuuuGCGaCAc -3'
miRNA:   3'- guCAACU---GCGACGCGUUGCu--CGC-GUa -5'
21316 5' -55.1 NC_004778.3 + 34451 0.71 0.604828
Target:  5'- aCGGgc-ACGCUGCGCGucgAgGAGCGCAc -3'
miRNA:   3'- -GUCaacUGCGACGCGU---UgCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 36858 0.71 0.636562
Target:  5'- ----cGGCGgUGCGCGucuugGCGAGCGCGg -3'
miRNA:   3'- gucaaCUGCgACGCGU-----UGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 16153 0.7 0.657714
Target:  5'- ----cGAcuCGCUGUGCGACGuGCGCGUc -3'
miRNA:   3'- gucaaCU--GCGACGCGUUGCuCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 45049 0.7 0.657714
Target:  5'- aCAGUUG-CGC-GC-CGACGAGCGCu- -3'
miRNA:   3'- -GUCAACuGCGaCGcGUUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 107920 0.7 0.699677
Target:  5'- ----cGACGCcGCcCGACGAGCGCGa -3'
miRNA:   3'- gucaaCUGCGaCGcGUUGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 27424 0.69 0.710041
Target:  5'- -uGUUGAuucuuuauUGcCUGCGCGAgGGGCGCGUg -3'
miRNA:   3'- guCAACU--------GC-GACGCGUUgCUCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 114916 0.69 0.720334
Target:  5'- uGGUgGACGCUaaaGCGCAagccgGCGuGCGCAc -3'
miRNA:   3'- gUCAaCUGCGA---CGCGU-----UGCuCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 52216 0.68 0.770382
Target:  5'- gCAGUUGuugcgacauCGCUGCGCGcgGCGAaaaCGCAUa -3'
miRNA:   3'- -GUCAACu--------GCGACGCGU--UGCUc--GCGUA- -5'
21316 5' -55.1 NC_004778.3 + 106620 0.68 0.780036
Target:  5'- aUAGUUGcgcguuuuGCGC-GCGCAGCGcgcucAGCGCGUu -3'
miRNA:   3'- -GUCAAC--------UGCGaCGCGUUGC-----UCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 88166 0.68 0.79891
Target:  5'- -cGU--ACGCUGUGCAGucUGAGCGCGc -3'
miRNA:   3'- guCAacUGCGACGCGUU--GCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 118781 0.68 0.79891
Target:  5'- ----gGGCGCgGCGCGGCcGGCGCGc -3'
miRNA:   3'- gucaaCUGCGaCGCGUUGcUCGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.