Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 128650 | 0.67 | 0.82247 |
Target: 5'- aAGUUGGCGCUGCaGCAucaaucgaauuguCGAGCaacggcggagGCAUg -3' miRNA: 3'- gUCAACUGCGACG-CGUu------------GCUCG----------CGUA- -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 51128 | 0.67 | 0.8207 |
Target: 5'- aCAGUUGuuGCUGCaauugcucaagcaacGCAGCGAGCuaAa -3' miRNA: 3'- -GUCAACugCGACG---------------CGUUGCUCGcgUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 53669 | 0.67 | 0.817138 |
Target: 5'- -cGUUGagGCGCUGCcCAAUGcGGCGCAa -3' miRNA: 3'- guCAAC--UGCGACGcGUUGC-UCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 52291 | 0.67 | 0.817138 |
Target: 5'- uCGGUUGGCGUUGUGCAAaaacuuguccAGCGCc- -3' miRNA: 3'- -GUCAACUGCGACGCGUUgc--------UCGCGua -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 95940 | 0.67 | 0.817138 |
Target: 5'- -cGgaGGCGCaGCGCGGCcGGCGCGc -3' miRNA: 3'- guCaaCUGCGaCGCGUUGcUCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 68255 | 0.67 | 0.817138 |
Target: 5'- uGGUgGAUGCUGCGUcGCuGGCGCu- -3' miRNA: 3'- gUCAaCUGCGACGCGuUGcUCGCGua -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 70139 | 0.68 | 0.80811 |
Target: 5'- cCAGUUGcAgGUUuuGCGGCGGGCGCGc -3' miRNA: 3'- -GUCAAC-UgCGAcgCGUUGCUCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 88166 | 0.68 | 0.79891 |
Target: 5'- -cGU--ACGCUGUGCAGucUGAGCGCGc -3' miRNA: 3'- guCAacUGCGACGCGUU--GCUCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 118781 | 0.68 | 0.79891 |
Target: 5'- ----gGGCGCgGCGCGGCcGGCGCGc -3' miRNA: 3'- gucaaCUGCGaCGCGUUGcUCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 65745 | 0.68 | 0.79891 |
Target: 5'- gCAGacGGCGUuugGCGCAGCGAGCcggGCGg -3' miRNA: 3'- -GUCaaCUGCGa--CGCGUUGCUCG---CGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 106620 | 0.68 | 0.780036 |
Target: 5'- aUAGUUGcgcguuuuGCGC-GCGCAGCGcgcucAGCGCGUu -3' miRNA: 3'- -GUCAAC--------UGCGaCGCGUUGC-----UCGCGUA- -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 52216 | 0.68 | 0.770382 |
Target: 5'- gCAGUUGuugcgacauCGCUGCGCGcgGCGAaaaCGCAUa -3' miRNA: 3'- -GUCAACu--------GCGACGCGU--UGCUc--GCGUA- -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 114916 | 0.69 | 0.720334 |
Target: 5'- uGGUgGACGCUaaaGCGCAagccgGCGuGCGCAc -3' miRNA: 3'- gUCAaCUGCGA---CGCGU-----UGCuCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 27424 | 0.69 | 0.710041 |
Target: 5'- -uGUUGAuucuuuauUGcCUGCGCGAgGGGCGCGUg -3' miRNA: 3'- guCAACU--------GC-GACGCGUUgCUCGCGUA- -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 107920 | 0.7 | 0.699677 |
Target: 5'- ----cGACGCcGCcCGACGAGCGCGa -3' miRNA: 3'- gucaaCUGCGaCGcGUUGCUCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 16153 | 0.7 | 0.657714 |
Target: 5'- ----cGAcuCGCUGUGCGACGuGCGCGUc -3' miRNA: 3'- gucaaCU--GCGACGCGUUGCuCGCGUA- -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 45049 | 0.7 | 0.657714 |
Target: 5'- aCAGUUG-CGC-GC-CGACGAGCGCu- -3' miRNA: 3'- -GUCAACuGCGaCGcGUUGCUCGCGua -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 36858 | 0.71 | 0.636562 |
Target: 5'- ----cGGCGgUGCGCGucuugGCGAGCGCGg -3' miRNA: 3'- gucaaCUGCgACGCGU-----UGCUCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 34451 | 0.71 | 0.604828 |
Target: 5'- aCGGgc-ACGCUGCGCGucgAgGAGCGCAc -3' miRNA: 3'- -GUCaacUGCGACGCGU---UgCUCGCGUa -5' |
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21316 | 5' | -55.1 | NC_004778.3 | + | 106787 | 0.72 | 0.573287 |
Target: 5'- -uGUUGAgcuCGCUGCGCAGCGuuuGCGaCAc -3' miRNA: 3'- guCAACU---GCGACGCGUUGCu--CGC-GUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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