miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21316 5' -55.1 NC_004778.3 + 8780 0.66 0.885091
Target:  5'- aCAuUUGGCGCaGCagcuucagcggcgagGCGGCGGGCGCGc -3'
miRNA:   3'- -GUcAACUGCGaCG---------------CGUUGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 10720 0.66 0.88221
Target:  5'- uGGUUGGaccgcuguuCGCUGCGCGcuccGCGGGCuGCc- -3'
miRNA:   3'- gUCAACU---------GCGACGCGU----UGCUCG-CGua -5'
21316 5' -55.1 NC_004778.3 + 12054 0.66 0.88221
Target:  5'- gCAGUUGGCGCgcuUGCAACGccgguugcaAGCGUg- -3'
miRNA:   3'- -GUCAACUGCGac-GCGUUGC---------UCGCGua -5'
21316 5' -55.1 NC_004778.3 + 15860 0.66 0.88221
Target:  5'- --aUUGGCGCaucucGCGCAGC-AGCGCGc -3'
miRNA:   3'- gucAACUGCGa----CGCGUUGcUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 16153 0.7 0.657714
Target:  5'- ----cGAcuCGCUGUGCGACGuGCGCGUc -3'
miRNA:   3'- gucaaCU--GCGACGCGUUGCuCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 27424 0.69 0.710041
Target:  5'- -uGUUGAuucuuuauUGcCUGCGCGAgGGGCGCGUg -3'
miRNA:   3'- guCAACU--------GC-GACGCGUUgCUCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 28893 0.66 0.88221
Target:  5'- -uGUUuGCGCgUGCGCGAUGAaCGCGUg -3'
miRNA:   3'- guCAAcUGCG-ACGCGUUGCUcGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 32823 0.66 0.889341
Target:  5'- gCAGcUGcCGCgGCGCGugGuGCGUAa -3'
miRNA:   3'- -GUCaACuGCGaCGCGUugCuCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 34451 0.71 0.604828
Target:  5'- aCGGgc-ACGCUGCGCGucgAgGAGCGCAc -3'
miRNA:   3'- -GUCaacUGCGACGCGU---UgCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 36858 0.71 0.636562
Target:  5'- ----cGGCGgUGCGCGucuugGCGAGCGCGg -3'
miRNA:   3'- gucaaCUGCgACGCGU-----UGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 45049 0.7 0.657714
Target:  5'- aCAGUUG-CGC-GC-CGACGAGCGCu- -3'
miRNA:   3'- -GUCAACuGCGaCGcGUUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 49584 0.67 0.85137
Target:  5'- ----aGAgGCUGCGuCGGCG-GCGCAa -3'
miRNA:   3'- gucaaCUgCGACGC-GUUGCuCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 51128 0.67 0.8207
Target:  5'- aCAGUUGuuGCUGCaauugcucaagcaacGCAGCGAGCuaAa -3'
miRNA:   3'- -GUCAACugCGACG---------------CGUUGCUCGcgUa -5'
21316 5' -55.1 NC_004778.3 + 52216 0.68 0.770382
Target:  5'- gCAGUUGuugcgacauCGCUGCGCGcgGCGAaaaCGCAUa -3'
miRNA:   3'- -GUCAACu--------GCGACGCGU--UGCUc--GCGUA- -5'
21316 5' -55.1 NC_004778.3 + 52291 0.67 0.817138
Target:  5'- uCGGUUGGCGUUGUGCAAaaacuuguccAGCGCc- -3'
miRNA:   3'- -GUCAACUGCGACGCGUUgc--------UCGCGua -5'
21316 5' -55.1 NC_004778.3 + 53669 0.67 0.817138
Target:  5'- -cGUUGagGCGCUGCcCAAUGcGGCGCAa -3'
miRNA:   3'- guCAAC--UGCGACGcGUUGC-UCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 57575 0.66 0.859416
Target:  5'- ----gGACGg-GCGCGACGAGgGCGg -3'
miRNA:   3'- gucaaCUGCgaCGCGUUGCUCgCGUa -5'
21316 5' -55.1 NC_004778.3 + 57914 0.73 0.511586
Target:  5'- ---gUGGCGCUugGCGCGGCGGGCGUc- -3'
miRNA:   3'- gucaACUGCGA--CGCGUUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 57996 1.06 0.003912
Target:  5'- uCAGUUGACGCUGCGCAACGAGCGCAUg -3'
miRNA:   3'- -GUCAACUGCGACGCGUUGCUCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 61630 0.72 0.55247
Target:  5'- --uUUGGCGCcGCGCAGCcAGCGCGc -3'
miRNA:   3'- gucAACUGCGaCGCGUUGcUCGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.