Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 89874 | 0.75 | 0.380577 |
Target: 5'- -uGUUGcCGCUGUGCAGCGuggugGGCGCAa -3' miRNA: 3'- guCAACuGCGACGCGUUGC-----UCGCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 88166 | 0.68 | 0.79891 |
Target: 5'- -cGU--ACGCUGUGCAGucUGAGCGCGc -3' miRNA: 3'- guCAacUGCGACGCGUU--GCUCGCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 88075 | 0.66 | 0.889341 |
Target: 5'- aCAG-UGGCuGUUGCGCAuGCGAuGUGCGa -3' miRNA: 3'- -GUCaACUG-CGACGCGU-UGCU-CGCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 84721 | 0.66 | 0.889341 |
Target: 5'- cCAGuUUGGCGaUGCGUAACGAGUucuGCu- -3' miRNA: 3'- -GUC-AACUGCgACGCGUUGCUCG---CGua -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 70139 | 0.68 | 0.80811 |
Target: 5'- cCAGUUGcAgGUUuuGCGGCGGGCGCGc -3' miRNA: 3'- -GUCAAC-UgCGAcgCGUUGCUCGCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 68255 | 0.67 | 0.817138 |
Target: 5'- uGGUgGAUGCUGCGUcGCuGGCGCu- -3' miRNA: 3'- gUCAaCUGCGACGCGuUGcUCGCGua -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 65745 | 0.68 | 0.79891 |
Target: 5'- gCAGacGGCGUuugGCGCAGCGAGCcggGCGg -3' miRNA: 3'- -GUCaaCUGCGa--CGCGUUGCUCG---CGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 61788 | 0.66 | 0.889341 |
Target: 5'- -cGUUGGCGC-GCGCuggcuGCGcGGCGCc- -3' miRNA: 3'- guCAACUGCGaCGCGu----UGC-UCGCGua -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 61630 | 0.72 | 0.55247 |
Target: 5'- --uUUGGCGCcGCGCAGCcAGCGCGc -3' miRNA: 3'- gucAACUGCGaCGCGUUGcUCGCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 57996 | 1.06 | 0.003912 |
Target: 5'- uCAGUUGACGCUGCGCAACGAGCGCAUg -3' miRNA: 3'- -GUCAACUGCGACGCGUUGCUCGCGUA- -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 57914 | 0.73 | 0.511586 |
Target: 5'- ---gUGGCGCUugGCGCGGCGGGCGUc- -3' miRNA: 3'- gucaACUGCGA--CGCGUUGCUCGCGua -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 57575 | 0.66 | 0.859416 |
Target: 5'- ----gGACGg-GCGCGACGAGgGCGg -3' miRNA: 3'- gucaaCUGCgaCGCGUUGCUCgCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 53669 | 0.67 | 0.817138 |
Target: 5'- -cGUUGagGCGCUGCcCAAUGcGGCGCAa -3' miRNA: 3'- guCAAC--UGCGACGcGUUGC-UCGCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 52291 | 0.67 | 0.817138 |
Target: 5'- uCGGUUGGCGUUGUGCAAaaacuuguccAGCGCc- -3' miRNA: 3'- -GUCAACUGCGACGCGUUgc--------UCGCGua -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 52216 | 0.68 | 0.770382 |
Target: 5'- gCAGUUGuugcgacauCGCUGCGCGcgGCGAaaaCGCAUa -3' miRNA: 3'- -GUCAACu--------GCGACGCGU--UGCUc--GCGUA- -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 51128 | 0.67 | 0.8207 |
Target: 5'- aCAGUUGuuGCUGCaauugcucaagcaacGCAGCGAGCuaAa -3' miRNA: 3'- -GUCAACugCGACG---------------CGUUGCUCGcgUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 49584 | 0.67 | 0.85137 |
Target: 5'- ----aGAgGCUGCGuCGGCG-GCGCAa -3' miRNA: 3'- gucaaCUgCGACGC-GUUGCuCGCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 45049 | 0.7 | 0.657714 |
Target: 5'- aCAGUUG-CGC-GC-CGACGAGCGCu- -3' miRNA: 3'- -GUCAACuGCGaCGcGUUGCUCGCGua -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 36858 | 0.71 | 0.636562 |
Target: 5'- ----cGGCGgUGCGCGucuugGCGAGCGCGg -3' miRNA: 3'- gucaaCUGCgACGCGU-----UGCUCGCGUa -5' |
|||||||
21316 | 5' | -55.1 | NC_004778.3 | + | 34451 | 0.71 | 0.604828 |
Target: 5'- aCGGgc-ACGCUGCGCGucgAgGAGCGCAc -3' miRNA: 3'- -GUCaacUGCGACGCGU---UgCUCGCGUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home