Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21316 | 5' | -55.1 | NC_004778.3 | + | 32823 | 0.66 | 0.889341 |
|
Target: 5'- gCAGcUGcCGCgGCGCGugGuGCGUAa -3' miRNA: 3'- -GUCaACuGCGaCGCGUugCuCGCGUa -5' |
|||||||
| 21316 | 5' | -55.1 | NC_004778.3 | + | 28893 | 0.66 | 0.88221 |
|
Target: 5'- -uGUUuGCGCgUGCGCGAUGAaCGCGUg -3' miRNA: 3'- guCAAcUGCG-ACGCGUUGCUcGCGUA- -5' |
|||||||
| 21316 | 5' | -55.1 | NC_004778.3 | + | 27424 | 0.69 | 0.710041 |
|
Target: 5'- -uGUUGAuucuuuauUGcCUGCGCGAgGGGCGCGUg -3' miRNA: 3'- guCAACU--------GC-GACGCGUUgCUCGCGUA- -5' |
|||||||
| 21316 | 5' | -55.1 | NC_004778.3 | + | 16153 | 0.7 | 0.657714 |
|
Target: 5'- ----cGAcuCGCUGUGCGACGuGCGCGUc -3' miRNA: 3'- gucaaCU--GCGACGCGUUGCuCGCGUA- -5' |
|||||||
| 21316 | 5' | -55.1 | NC_004778.3 | + | 15860 | 0.66 | 0.88221 |
|
Target: 5'- --aUUGGCGCaucucGCGCAGC-AGCGCGc -3' miRNA: 3'- gucAACUGCGa----CGCGUUGcUCGCGUa -5' |
|||||||
| 21316 | 5' | -55.1 | NC_004778.3 | + | 12054 | 0.66 | 0.88221 |
|
Target: 5'- gCAGUUGGCGCgcuUGCAACGccgguugcaAGCGUg- -3' miRNA: 3'- -GUCAACUGCGac-GCGUUGC---------UCGCGua -5' |
|||||||
| 21316 | 5' | -55.1 | NC_004778.3 | + | 10720 | 0.66 | 0.88221 |
|
Target: 5'- uGGUUGGaccgcuguuCGCUGCGCGcuccGCGGGCuGCc- -3' miRNA: 3'- gUCAACU---------GCGACGCGU----UGCUCG-CGua -5' |
|||||||
| 21316 | 5' | -55.1 | NC_004778.3 | + | 8780 | 0.66 | 0.885091 |
|
Target: 5'- aCAuUUGGCGCaGCagcuucagcggcgagGCGGCGGGCGCGc -3' miRNA: 3'- -GUcAACUGCGaCG---------------CGUUGCUCGCGUa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home