miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21316 5' -55.1 NC_004778.3 + 57996 1.06 0.003912
Target:  5'- uCAGUUGACGCUGCGCAACGAGCGCAUg -3'
miRNA:   3'- -GUCAACUGCGACGCGUUGCUCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 52291 0.67 0.817138
Target:  5'- uCGGUUGGCGUUGUGCAAaaacuuguccAGCGCc- -3'
miRNA:   3'- -GUCAACUGCGACGCGUUgc--------UCGCGua -5'
21316 5' -55.1 NC_004778.3 + 53669 0.67 0.817138
Target:  5'- -cGUUGagGCGCUGCcCAAUGcGGCGCAa -3'
miRNA:   3'- guCAAC--UGCGACGcGUUGC-UCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 91357 0.67 0.834648
Target:  5'- ----aGACGCUGUuCGACGAcaGCGCAa -3'
miRNA:   3'- gucaaCUGCGACGcGUUGCU--CGCGUa -5'
21316 5' -55.1 NC_004778.3 + 114352 0.66 0.859416
Target:  5'- gCGGuUUGACcCUGCGCGccGCGGGCGa-- -3'
miRNA:   3'- -GUC-AACUGcGACGCGU--UGCUCGCgua -5'
21316 5' -55.1 NC_004778.3 + 10720 0.66 0.88221
Target:  5'- uGGUUGGaccgcuguuCGCUGCGCGcuccGCGGGCuGCc- -3'
miRNA:   3'- gUCAACU---------GCGACGCGU----UGCUCG-CGua -5'
21316 5' -55.1 NC_004778.3 + 90670 0.66 0.88221
Target:  5'- gCGGUcGACGCUGCGUAcuucuCG-GCGUg- -3'
miRNA:   3'- -GUCAaCUGCGACGCGUu----GCuCGCGua -5'
21316 5' -55.1 NC_004778.3 + 8780 0.66 0.885091
Target:  5'- aCAuUUGGCGCaGCagcuucagcggcgagGCGGCGGGCGCGc -3'
miRNA:   3'- -GUcAACUGCGaCG---------------CGUUGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 111561 0.66 0.896228
Target:  5'- -cGUUGA-GCUG-GCGAcCGGGCGCGc -3'
miRNA:   3'- guCAACUgCGACgCGUU-GCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 118781 0.68 0.79891
Target:  5'- ----gGGCGCgGCGCGGCcGGCGCGc -3'
miRNA:   3'- gucaaCUGCGaCGCGUUGcUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 65745 0.68 0.79891
Target:  5'- gCAGacGGCGUuugGCGCAGCGAGCcggGCGg -3'
miRNA:   3'- -GUCaaCUGCGa--CGCGUUGCUCG---CGUa -5'
21316 5' -55.1 NC_004778.3 + 52216 0.68 0.770382
Target:  5'- gCAGUUGuugcgacauCGCUGCGCGcgGCGAaaaCGCAUa -3'
miRNA:   3'- -GUCAACu--------GCGACGCGU--UGCUc--GCGUA- -5'
21316 5' -55.1 NC_004778.3 + 89874 0.75 0.380577
Target:  5'- -uGUUGcCGCUGUGCAGCGuggugGGCGCAa -3'
miRNA:   3'- guCAACuGCGACGCGUUGC-----UCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 106637 0.72 0.542146
Target:  5'- -----aACGCUGCGCAGCGAGCuCAa -3'
miRNA:   3'- gucaacUGCGACGCGUUGCUCGcGUa -5'
21316 5' -55.1 NC_004778.3 + 61630 0.72 0.55247
Target:  5'- --uUUGGCGCcGCGCAGCcAGCGCGc -3'
miRNA:   3'- gucAACUGCGaCGCGUUGcUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 34451 0.71 0.604828
Target:  5'- aCGGgc-ACGCUGCGCGucgAgGAGCGCAc -3'
miRNA:   3'- -GUCaacUGCGACGCGU---UgCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 16153 0.7 0.657714
Target:  5'- ----cGAcuCGCUGUGCGACGuGCGCGUc -3'
miRNA:   3'- gucaaCU--GCGACGCGUUGCuCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 45049 0.7 0.657714
Target:  5'- aCAGUUG-CGC-GC-CGACGAGCGCu- -3'
miRNA:   3'- -GUCAACuGCGaCGcGUUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 27424 0.69 0.710041
Target:  5'- -uGUUGAuucuuuauUGcCUGCGCGAgGGGCGCGUg -3'
miRNA:   3'- guCAACU--------GC-GACGCGUUgCUCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 114916 0.69 0.720334
Target:  5'- uGGUgGACGCUaaaGCGCAagccgGCGuGCGCAc -3'
miRNA:   3'- gUCAaCUGCGA---CGCGU-----UGCuCGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.