miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21316 5' -55.1 NC_004778.3 + 107920 0.7 0.699677
Target:  5'- ----cGACGCcGCcCGACGAGCGCGa -3'
miRNA:   3'- gucaaCUGCGaCGcGUUGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 57914 0.73 0.511586
Target:  5'- ---gUGGCGCUugGCGCGGCGGGCGUc- -3'
miRNA:   3'- gucaACUGCGA--CGCGUUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 51128 0.67 0.8207
Target:  5'- aCAGUUGuuGCUGCaauugcucaagcaacGCAGCGAGCuaAa -3'
miRNA:   3'- -GUCAACugCGACG---------------CGUUGCUCGcgUa -5'
21316 5' -55.1 NC_004778.3 + 90728 0.75 0.406759
Target:  5'- gUAGUUaaaaucGGCGCUGCGCucggcGGCGAGCGCu- -3'
miRNA:   3'- -GUCAA------CUGCGACGCG-----UUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 106787 0.72 0.573287
Target:  5'- -uGUUGAgcuCGCUGCGCAGCGuuuGCGaCAc -3'
miRNA:   3'- guCAACU---GCGACGCGUUGCu--CGC-GUa -5'
21316 5' -55.1 NC_004778.3 + 107953 0.75 0.415733
Target:  5'- -cGUUGccaaACGCUaGCGCAGaCGAGCGCAa -3'
miRNA:   3'- guCAAC----UGCGA-CGCGUU-GCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 121130 0.75 0.406759
Target:  5'- aAGgcGGCGCcgGgGCAGCGGGCGCGg -3'
miRNA:   3'- gUCaaCUGCGa-CgCGUUGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 36858 0.71 0.636562
Target:  5'- ----cGGCGgUGCGCGucuugGCGAGCGCGg -3'
miRNA:   3'- gucaaCUGCgACGCGU-----UGCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 16153 0.7 0.657714
Target:  5'- ----cGAcuCGCUGUGCGACGuGCGCGUc -3'
miRNA:   3'- gucaaCU--GCGACGCGUUGCuCGCGUA- -5'
21316 5' -55.1 NC_004778.3 + 106637 0.72 0.542146
Target:  5'- -----aACGCUGCGCAGCGAGCuCAa -3'
miRNA:   3'- gucaacUGCGACGCGUUGCUCGcGUa -5'
21316 5' -55.1 NC_004778.3 + 45049 0.7 0.657714
Target:  5'- aCAGUUG-CGC-GC-CGACGAGCGCu- -3'
miRNA:   3'- -GUCAACuGCGaCGcGUUGCUCGCGua -5'
21316 5' -55.1 NC_004778.3 + 34451 0.71 0.604828
Target:  5'- aCGGgc-ACGCUGCGCGucgAgGAGCGCAc -3'
miRNA:   3'- -GUCaacUGCGACGCGU---UgCUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 52216 0.68 0.770382
Target:  5'- gCAGUUGuugcgacauCGCUGCGCGcgGCGAaaaCGCAUa -3'
miRNA:   3'- -GUCAACu--------GCGACGCGU--UGCUc--GCGUA- -5'
21316 5' -55.1 NC_004778.3 + 65745 0.68 0.79891
Target:  5'- gCAGacGGCGUuugGCGCAGCGAGCcggGCGg -3'
miRNA:   3'- -GUCaaCUGCGa--CGCGUUGCUCG---CGUa -5'
21316 5' -55.1 NC_004778.3 + 118781 0.68 0.79891
Target:  5'- ----gGGCGCgGCGCGGCcGGCGCGc -3'
miRNA:   3'- gucaaCUGCGaCGCGUUGcUCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 52291 0.67 0.817138
Target:  5'- uCGGUUGGCGUUGUGCAAaaacuuguccAGCGCc- -3'
miRNA:   3'- -GUCAACUGCGACGCGUUgc--------UCGCGua -5'
21316 5' -55.1 NC_004778.3 + 53669 0.67 0.817138
Target:  5'- -cGUUGagGCGCUGCcCAAUGcGGCGCAa -3'
miRNA:   3'- guCAAC--UGCGACGcGUUGC-UCGCGUa -5'
21316 5' -55.1 NC_004778.3 + 91357 0.67 0.834648
Target:  5'- ----aGACGCUGUuCGACGAcaGCGCAa -3'
miRNA:   3'- gucaaCUGCGACGcGUUGCU--CGCGUa -5'
21316 5' -55.1 NC_004778.3 + 90670 0.66 0.88221
Target:  5'- gCGGUcGACGCUGCGUAcuucuCG-GCGUg- -3'
miRNA:   3'- -GUCAaCUGCGACGCGUu----GCuCGCGua -5'
21316 5' -55.1 NC_004778.3 + 8780 0.66 0.885091
Target:  5'- aCAuUUGGCGCaGCagcuucagcggcgagGCGGCGGGCGCGc -3'
miRNA:   3'- -GUcAACUGCGaCG---------------CGUUGCUCGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.