miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21317 3' -49.7 NC_004778.3 + 86521 0.67 0.987645
Target:  5'- aGGCGCUGCAGgugcuUGGGGUcgcgccGAUUGuCAAu -3'
miRNA:   3'- aCCGCGAUGUC-----AUCUCA------UUGAC-GUUc -5'
21317 3' -49.7 NC_004778.3 + 15889 0.67 0.985944
Target:  5'- cGGCGUUGCAGUacaauuuguacAGAGUGGg-GaCAGGg -3'
miRNA:   3'- aCCGCGAUGUCA-----------UCUCAUUgaC-GUUC- -5'
21317 3' -49.7 NC_004778.3 + 51433 0.67 0.982011
Target:  5'- cGGUGCacaaGCGGUAcauGAGgcAUUGCGAGu -3'
miRNA:   3'- aCCGCGa---UGUCAU---CUCauUGACGUUC- -5'
21317 3' -49.7 NC_004778.3 + 77601 0.68 0.97976
Target:  5'- gUGGCGCUGCuuauguacGUGGcguuGUcACUGCGAa -3'
miRNA:   3'- -ACCGCGAUGu-------CAUCu---CAuUGACGUUc -5'
21317 3' -49.7 NC_004778.3 + 46713 0.7 0.93981
Target:  5'- aUGGCGCcGCAGUu--GUAAUUGUAAa -3'
miRNA:   3'- -ACCGCGaUGUCAucuCAUUGACGUUc -5'
21317 3' -49.7 NC_004778.3 + 124035 0.71 0.917465
Target:  5'- gUGGCGCUGCAGUuucuuGUAcuuCgUGCAAGu -3'
miRNA:   3'- -ACCGCGAUGUCAucu--CAUu--G-ACGUUC- -5'
21317 3' -49.7 NC_004778.3 + 52745 0.71 0.911194
Target:  5'- aGGCGCUggaACGGUAuGAGcacgcuCUGCGGGa -3'
miRNA:   3'- aCCGCGA---UGUCAU-CUCauu---GACGUUC- -5'
21317 3' -49.7 NC_004778.3 + 35393 0.71 0.890768
Target:  5'- cGGUGC-ACAGgcacGAGUGGCcGCAGGg -3'
miRNA:   3'- aCCGCGaUGUCau--CUCAUUGaCGUUC- -5'
21317 3' -49.7 NC_004778.3 + 15546 0.73 0.806752
Target:  5'- cGGUGCUcCAGUGGGGcgGAUUGUGAGc -3'
miRNA:   3'- aCCGCGAuGUCAUCUCa-UUGACGUUC- -5'
21317 3' -49.7 NC_004778.3 + 97179 0.75 0.736672
Target:  5'- uUGGCGCUGCucuuuGUGGAGcUGAUUGUAc- -3'
miRNA:   3'- -ACCGCGAUGu----CAUCUC-AUUGACGUuc -5'
21317 3' -49.7 NC_004778.3 + 61601 1.09 0.008644
Target:  5'- cUGGCGCUACAGUAGAGUAACUGCAAGc -3'
miRNA:   3'- -ACCGCGAUGUCAUCUCAUUGACGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.