Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21317 | 3' | -49.7 | NC_004778.3 | + | 61601 | 1.09 | 0.008644 |
Target: 5'- cUGGCGCUACAGUAGAGUAACUGCAAGc -3' miRNA: 3'- -ACCGCGAUGUCAUCUCAUUGACGUUC- -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 15889 | 0.67 | 0.985944 |
Target: 5'- cGGCGUUGCAGUacaauuuguacAGAGUGGg-GaCAGGg -3' miRNA: 3'- aCCGCGAUGUCA-----------UCUCAUUgaC-GUUC- -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 51433 | 0.67 | 0.982011 |
Target: 5'- cGGUGCacaaGCGGUAcauGAGgcAUUGCGAGu -3' miRNA: 3'- aCCGCGa---UGUCAU---CUCauUGACGUUC- -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 77601 | 0.68 | 0.97976 |
Target: 5'- gUGGCGCUGCuuauguacGUGGcguuGUcACUGCGAa -3' miRNA: 3'- -ACCGCGAUGu-------CAUCu---CAuUGACGUUc -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 46713 | 0.7 | 0.93981 |
Target: 5'- aUGGCGCcGCAGUu--GUAAUUGUAAa -3' miRNA: 3'- -ACCGCGaUGUCAucuCAUUGACGUUc -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 124035 | 0.71 | 0.917465 |
Target: 5'- gUGGCGCUGCAGUuucuuGUAcuuCgUGCAAGu -3' miRNA: 3'- -ACCGCGAUGUCAucu--CAUu--G-ACGUUC- -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 52745 | 0.71 | 0.911194 |
Target: 5'- aGGCGCUggaACGGUAuGAGcacgcuCUGCGGGa -3' miRNA: 3'- aCCGCGA---UGUCAU-CUCauu---GACGUUC- -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 97179 | 0.75 | 0.736672 |
Target: 5'- uUGGCGCUGCucuuuGUGGAGcUGAUUGUAc- -3' miRNA: 3'- -ACCGCGAUGu----CAUCUC-AUUGACGUuc -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 86521 | 0.67 | 0.987645 |
Target: 5'- aGGCGCUGCAGgugcuUGGGGUcgcgccGAUUGuCAAu -3' miRNA: 3'- aCCGCGAUGUC-----AUCUCA------UUGAC-GUUc -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 35393 | 0.71 | 0.890768 |
Target: 5'- cGGUGC-ACAGgcacGAGUGGCcGCAGGg -3' miRNA: 3'- aCCGCGaUGUCau--CUCAUUGaCGUUC- -5' |
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21317 | 3' | -49.7 | NC_004778.3 | + | 15546 | 0.73 | 0.806752 |
Target: 5'- cGGUGCUcCAGUGGGGcgGAUUGUGAGc -3' miRNA: 3'- aCCGCGAuGUCAUCUCa-UUGACGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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