miRNA display CGI


Results 1 - 20 of 359 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21317 5' -62.1 NC_004778.3 + 90045 0.66 0.621837
Target:  5'- -gCGCGCaAGCC-GCuuGCGCCcaccACGCu -3'
miRNA:   3'- cgGCGCG-UCGGuCGcgCGCGGu---UGCG- -5'
21317 5' -62.1 NC_004778.3 + 68613 0.66 0.621837
Target:  5'- cGCCG-GCGGCggCGGCG-GCGgCGGCGg -3'
miRNA:   3'- -CGGCgCGUCG--GUCGCgCGCgGUUGCg -5'
21317 5' -62.1 NC_004778.3 + 70205 0.66 0.621837
Target:  5'- cGCCgguggGCGCAGgcccuucaaacuCCAGCuccagacggauGCGCGCCAgaaugGCGUn -3'
miRNA:   3'- -CGG-----CGCGUC------------GGUCG-----------CGCGCGGU-----UGCG- -5'
21317 5' -62.1 NC_004778.3 + 21087 0.66 0.621837
Target:  5'- cUCGgGCGGCCGGCuggGCuGCGgCAuuauCGCa -3'
miRNA:   3'- cGGCgCGUCGGUCG---CG-CGCgGUu---GCG- -5'
21317 5' -62.1 NC_004778.3 + 15317 0.66 0.621837
Target:  5'- gGUCGCGUuGUC-GCGCGUGUCc-CGCa -3'
miRNA:   3'- -CGGCGCGuCGGuCGCGCGCGGuuGCG- -5'
21317 5' -62.1 NC_004778.3 + 34413 0.66 0.621837
Target:  5'- gGCUGCuccgGCAGCgCGGCGUGC-CCGuacUGCu -3'
miRNA:   3'- -CGGCG----CGUCG-GUCGCGCGcGGUu--GCG- -5'
21317 5' -62.1 NC_004778.3 + 88215 0.66 0.621837
Target:  5'- uGCCgGCGCGGCC-GC-C-CGUCAaACGCg -3'
miRNA:   3'- -CGG-CGCGUCGGuCGcGcGCGGU-UGCG- -5'
21317 5' -62.1 NC_004778.3 + 36550 0.66 0.621837
Target:  5'- cGCCGCauuuGgAaCCGGCGCGCGCgAAUa- -3'
miRNA:   3'- -CGGCG----CgUcGGUCGCGCGCGgUUGcg -5'
21317 5' -62.1 NC_004778.3 + 68849 0.66 0.621837
Target:  5'- uGUCGauuuGUAGCUuuCGgGCGCCAcgGCGCg -3'
miRNA:   3'- -CGGCg---CGUCGGucGCgCGCGGU--UGCG- -5'
21317 5' -62.1 NC_004778.3 + 41991 0.66 0.621837
Target:  5'- cGCCGCG-AGCCAGUu--CuCCAACGCc -3'
miRNA:   3'- -CGGCGCgUCGGUCGcgcGcGGUUGCG- -5'
21317 5' -62.1 NC_004778.3 + 63725 0.66 0.621837
Target:  5'- -aCGCGCAcGUC-GUGCGCGCCuuucauuaaGCa -3'
miRNA:   3'- cgGCGCGU-CGGuCGCGCGCGGuug------CG- -5'
21317 5' -62.1 NC_004778.3 + 45468 0.66 0.621837
Target:  5'- cGCUGcCGCGGUCGGgcaacuCGCGCGgaCCGuCGCu -3'
miRNA:   3'- -CGGC-GCGUCGGUC------GCGCGC--GGUuGCG- -5'
21317 5' -62.1 NC_004778.3 + 96693 0.66 0.618855
Target:  5'- cGCCG-GCuGUCAugauaagauGCGCGCGCgcguguuaauuugaUAACGCg -3'
miRNA:   3'- -CGGCgCGuCGGU---------CGCGCGCG--------------GUUGCG- -5'
21317 5' -62.1 NC_004778.3 + 8724 0.66 0.611901
Target:  5'- gGCCGagaacuuugaCGCcGCCGGCGCcguggcGCGCCAcccCGUc -3'
miRNA:   3'- -CGGC----------GCGuCGGUCGCG------CGCGGUu--GCG- -5'
21317 5' -62.1 NC_004778.3 + 16072 0.66 0.611901
Target:  5'- uCCG-GCaAGCCcGCGCGuCGCCAcuuucaacucggGCGUg -3'
miRNA:   3'- cGGCgCG-UCGGuCGCGC-GCGGU------------UGCG- -5'
21317 5' -62.1 NC_004778.3 + 118049 0.66 0.611901
Target:  5'- aGCUGCGCucGUCGaUGaGCGCCAAgGCg -3'
miRNA:   3'- -CGGCGCGu-CGGUcGCgCGCGGUUgCG- -5'
21317 5' -62.1 NC_004778.3 + 124463 0.66 0.611901
Target:  5'- uCgGUGCGGCCuguauuuauaGGCGCGauaagGCCcGCGCc -3'
miRNA:   3'- cGgCGCGUCGG----------UCGCGCg----CGGuUGCG- -5'
21317 5' -62.1 NC_004778.3 + 53101 0.66 0.611901
Target:  5'- cGCCGcCGCAGCaacCGC-CGCCAcaGCa -3'
miRNA:   3'- -CGGC-GCGUCGgucGCGcGCGGUugCG- -5'
21317 5' -62.1 NC_004778.3 + 114368 0.66 0.611901
Target:  5'- cGCCGCGggcgaGGCCGGCccuUGCGUagCAACGg -3'
miRNA:   3'- -CGGCGCg----UCGGUCGc--GCGCG--GUUGCg -5'
21317 5' -62.1 NC_004778.3 + 53131 0.66 0.611901
Target:  5'- cGCCGCcaCAGCaacCGC-CGCCGGCGUu -3'
miRNA:   3'- -CGGCGc-GUCGgucGCGcGCGGUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.