miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21318 5' -45.6 NC_004778.3 + 110111 0.66 0.999957
Target:  5'- gCGC-GCCgAGCGCUUGGGCAc------ -3'
miRNA:   3'- -GUGuUGG-UCGUGAGCCUGUuuuuaau -5'
21318 5' -45.6 NC_004778.3 + 38751 0.66 0.999955
Target:  5'- gACGGCCGGCGCUuugcggaacauagUGGACGc------ -3'
miRNA:   3'- gUGUUGGUCGUGA-------------GCCUGUuuuuaau -5'
21318 5' -45.6 NC_004778.3 + 31511 0.66 0.999941
Target:  5'- gGCAGCCucGUACUUGGugGcAAAAUa- -3'
miRNA:   3'- gUGUUGGu-CGUGAGCCugU-UUUUAau -5'
21318 5' -45.6 NC_004778.3 + 2087 0.66 0.999941
Target:  5'- uGCAACCGGUuuUUGGACGGc----- -3'
miRNA:   3'- gUGUUGGUCGugAGCCUGUUuuuaau -5'
21318 5' -45.6 NC_004778.3 + 20749 0.66 0.999941
Target:  5'- gCGCAACgGucuGCGCUUGGGCAAc----- -3'
miRNA:   3'- -GUGUUGgU---CGUGAGCCUGUUuuuaau -5'
21318 5' -45.6 NC_004778.3 + 10675 0.66 0.999921
Target:  5'- gGCGAUCGGCACUuuaCGGugAggcAAAAUUc -3'
miRNA:   3'- gUGUUGGUCGUGA---GCCugU---UUUUAAu -5'
21318 5' -45.6 NC_004778.3 + 2595 0.66 0.999921
Target:  5'- gGCGugCcGCACUCGGGCc------- -3'
miRNA:   3'- gUGUugGuCGUGAGCCUGuuuuuaau -5'
21318 5' -45.6 NC_004778.3 + 117873 0.66 0.999895
Target:  5'- gUACAACCGGUGCaUGGACGc------ -3'
miRNA:   3'- -GUGUUGGUCGUGaGCCUGUuuuuaau -5'
21318 5' -45.6 NC_004778.3 + 23237 0.66 0.999895
Target:  5'- uCGCGACCGugccaaaggaucGCGgUCGcGACAAAAAUg- -3'
miRNA:   3'- -GUGUUGGU------------CGUgAGC-CUGUUUUUAau -5'
21318 5' -45.6 NC_004778.3 + 33182 0.67 0.999819
Target:  5'- uGC-GCCAGCACgCGG-CAAGGGUg- -3'
miRNA:   3'- gUGuUGGUCGUGaGCCuGUUUUUAau -5'
21318 5' -45.6 NC_004778.3 + 86276 0.67 0.999765
Target:  5'- gUugAACuCGGCGCgcaugCGGACAAAGu--- -3'
miRNA:   3'- -GugUUG-GUCGUGa----GCCUGUUUUuaau -5'
21318 5' -45.6 NC_004778.3 + 78546 0.67 0.999697
Target:  5'- gGCGGCCAGUugUUGuGGCAAc----- -3'
miRNA:   3'- gUGUUGGUCGugAGC-CUGUUuuuaau -5'
21318 5' -45.6 NC_004778.3 + 97303 0.67 0.999697
Target:  5'- uCACAAUgGGCGCgaaCGGACuGAAAa-- -3'
miRNA:   3'- -GUGUUGgUCGUGa--GCCUGuUUUUaau -5'
21318 5' -45.6 NC_004778.3 + 40178 0.67 0.999697
Target:  5'- gGCAGCC-GCGCguugCGGcACAAAAAa-- -3'
miRNA:   3'- gUGUUGGuCGUGa---GCC-UGUUUUUaau -5'
21318 5' -45.6 NC_004778.3 + 43115 0.67 0.999697
Target:  5'- uGCAuCCAGCACugcaucuuggUCGGGCGGAu---- -3'
miRNA:   3'- gUGUuGGUCGUG----------AGCCUGUUUuuaau -5'
21318 5' -45.6 NC_004778.3 + 70370 0.67 0.999509
Target:  5'- uGCuguCCGGCGCUUGGGCGc------ -3'
miRNA:   3'- gUGuu-GGUCGUGAGCCUGUuuuuaau -5'
21318 5' -45.6 NC_004778.3 + 94796 0.67 0.999509
Target:  5'- uGCGGCCcGgGCUCGGACGc------ -3'
miRNA:   3'- gUGUUGGuCgUGAGCCUGUuuuuaau -5'
21318 5' -45.6 NC_004778.3 + 100757 0.67 0.999509
Target:  5'- gCugGACCAGCuacaACUgcaaaCGGGCAAAAcgUAc -3'
miRNA:   3'- -GugUUGGUCG----UGA-----GCCUGUUUUuaAU- -5'
21318 5' -45.6 NC_004778.3 + 42525 0.68 0.999382
Target:  5'- gACAACgGGCugcucaACUUGGACAAAAu--- -3'
miRNA:   3'- gUGUUGgUCG------UGAGCCUGUUUUuaau -5'
21318 5' -45.6 NC_004778.3 + 83232 0.68 0.999382
Target:  5'- gGCGGCCAGCuGCaCGGGCGAu----- -3'
miRNA:   3'- gUGUUGGUCG-UGaGCCUGUUuuuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.