miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21319 5' -54.1 NC_004778.3 + 122844 0.66 0.926154
Target:  5'- aUCGGCGuuGACgcaugucuaagggaUUUGUUUUUUGAGAAc -3'
miRNA:   3'- -AGUCGCggCUG--------------GAGCGAAAAGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 123044 0.66 0.922218
Target:  5'- -uGGCGCCGACCcCGCUUUcCa---- -3'
miRNA:   3'- agUCGCGGCUGGaGCGAAAaGcucuu -5'
21319 5' -54.1 NC_004778.3 + 64621 0.66 0.922218
Target:  5'- cUCGGCauucGCCGGCCUCgGCg--UCGAa-- -3'
miRNA:   3'- -AGUCG----CGGCUGGAG-CGaaaAGCUcuu -5'
21319 5' -54.1 NC_004778.3 + 122870 0.66 0.918745
Target:  5'- -aGGCGCCGacGCagucuaaagauagcaCUUGUUUUUCGAGAAc -3'
miRNA:   3'- agUCGCGGC--UG---------------GAGCGAAAAGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 99668 0.67 0.900011
Target:  5'- gUCGGCGCUGGCgcaUguuuaaaaauagcacUCGCUUUUCGGGu- -3'
miRNA:   3'- -AGUCGCGGCUG---G---------------AGCGAAAAGCUCuu -5'
21319 5' -54.1 NC_004778.3 + 23820 0.67 0.886278
Target:  5'- gUCGGCGCUGACgcaUgucucaaauuaguacUCGCUUUaCGAGAAc -3'
miRNA:   3'- -AGUCGCGGCUG---G---------------AGCGAAAaGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 23886 0.67 0.886278
Target:  5'- gUCGGCGCUGACgcaCgucucaaauuggcauUCGCUUUaCGAGAAc -3'
miRNA:   3'- -AGUCGCGGCUG---G---------------AGCGAAAaGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 24017 0.67 0.886278
Target:  5'- gUCGGCGCUGACgcaUgucucaaauuaguacUCGCUUUaCGAGAAc -3'
miRNA:   3'- -AGUCGCGGCUG---G---------------AGCGAAAaGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 24083 0.67 0.886278
Target:  5'- gUCGGCGCUGACgcaCgucucaaauuggcauUCGCUUUaCGAGAAc -3'
miRNA:   3'- -AGUCGCGGCUG---G---------------AGCGAAAaGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 24215 0.67 0.886278
Target:  5'- gUCGGCGCUGACgcaUgucucaaauuaguacUCGCUUUaCGAGAAc -3'
miRNA:   3'- -AGUCGCGGCUG---G---------------AGCGAAAaGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 24282 0.67 0.886278
Target:  5'- gUCGGCGCUGACgcaCgucucaaauuggcauUCGCUUUaCGAGAAc -3'
miRNA:   3'- -AGUCGCGGCUG---G---------------AGCGAAAaGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 99265 0.68 0.871586
Target:  5'- --cGCGCUGacGCacguauaagauagcgCUCGCUUUUCGAGAAc -3'
miRNA:   3'- aguCGCGGC--UG---------------GAGCGAAAAGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 124872 0.68 0.860753
Target:  5'- gUCAuCGCCGACCcCGCUUUcCGAa-- -3'
miRNA:   3'- -AGUcGCGGCUGGaGCGAAAaGCUcuu -5'
21319 5' -54.1 NC_004778.3 + 99602 0.68 0.855977
Target:  5'- gUCGGCGCUGACgcaCgucuaaaaauaacacUCGCUUUUCGGGu- -3'
miRNA:   3'- -AGUCGCGGCUG---G---------------AGCGAAAAGCUCuu -5'
21319 5' -54.1 NC_004778.3 + 90811 0.68 0.852749
Target:  5'- gCAGCGUCGACCgCGCUgacgUUGAc-- -3'
miRNA:   3'- aGUCGCGGCUGGaGCGAaa--AGCUcuu -5'
21319 5' -54.1 NC_004778.3 + 61074 0.68 0.827488
Target:  5'- gCGGCGCCGACUgaaugcgCGCUUUccagUCGuuGAAc -3'
miRNA:   3'- aGUCGCGGCUGGa------GCGAAA----AGCu-CUU- -5'
21319 5' -54.1 NC_004778.3 + 113908 0.69 0.818677
Target:  5'- gCGGCGCCGcggguuCCUCGCUcgcgGAGAGc -3'
miRNA:   3'- aGUCGCGGCu-----GGAGCGAaaagCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 125349 0.69 0.779801
Target:  5'- -gGGCGCCGACCUCGUgaaggucacCGAcGAu -3'
miRNA:   3'- agUCGCGGCUGGAGCGaaaa-----GCU-CUu -5'
21319 5' -54.1 NC_004778.3 + 31249 0.7 0.762334
Target:  5'- -uGGCGCgCGcACCUCGCgc--CGAGAAa -3'
miRNA:   3'- agUCGCG-GC-UGGAGCGaaaaGCUCUU- -5'
21319 5' -54.1 NC_004778.3 + 125122 0.7 0.752454
Target:  5'- aUCGcCGcCCGACCcCGCUUUUgGAGAAc -3'
miRNA:   3'- -AGUcGC-GGCUGGaGCGAAAAgCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.