miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21320 5' -56.4 NC_004778.3 + 47738 0.66 0.887998
Target:  5'- uGGCGCAagccUUGUGGCGCauacacGCCGAc -3'
miRNA:   3'- gCCGCGU----AGCAUCGCGcaga--UGGCUc -5'
21320 5' -56.4 NC_004778.3 + 15319 0.66 0.887998
Target:  5'- cCGGuCGCGUUGUcGCGCGUgUcCCGc- -3'
miRNA:   3'- -GCC-GCGUAGCAuCGCGCAgAuGGCuc -5'
21320 5' -56.4 NC_004778.3 + 35974 0.66 0.887998
Target:  5'- aGGCGC-UUGuUGGUGCGgc-GCCGGGu -3'
miRNA:   3'- gCCGCGuAGC-AUCGCGCagaUGGCUC- -5'
21320 5' -56.4 NC_004778.3 + 36864 0.66 0.881062
Target:  5'- uGGCGCcggCGguGCGCGUCUuGgCGAGc -3'
miRNA:   3'- gCCGCGua-GCauCGCGCAGA-UgGCUC- -5'
21320 5' -56.4 NC_004778.3 + 108579 0.66 0.873906
Target:  5'- gCGGCGCAcC--AGCGCGUCcACCu-- -3'
miRNA:   3'- -GCCGCGUaGcaUCGCGCAGaUGGcuc -5'
21320 5' -56.4 NC_004778.3 + 25833 0.66 0.866532
Target:  5'- gCGGCGgAUUGUAGCGUGcCguugACCc-- -3'
miRNA:   3'- -GCCGCgUAGCAUCGCGCaGa---UGGcuc -5'
21320 5' -56.4 NC_004778.3 + 16439 0.66 0.858948
Target:  5'- cCGGCacguuuacaaccGCGUCGUAGUGCccGUCgcaCGAGu -3'
miRNA:   3'- -GCCG------------CGUAGCAUCGCG--CAGaugGCUC- -5'
21320 5' -56.4 NC_004778.3 + 71204 0.67 0.851159
Target:  5'- aGGCGUuggCG-AGgGUGUC-GCCGAGg -3'
miRNA:   3'- gCCGCGua-GCaUCgCGCAGaUGGCUC- -5'
21320 5' -56.4 NC_004778.3 + 124308 0.67 0.851159
Target:  5'- gCGGCGCcggCGUGGgcacgGCGUCUuCCGGc -3'
miRNA:   3'- -GCCGCGua-GCAUCg----CGCAGAuGGCUc -5'
21320 5' -56.4 NC_004778.3 + 124231 0.67 0.82578
Target:  5'- cCGcGCGCAUC--AGCGCGccgugcaUCUGCaCGAGc -3'
miRNA:   3'- -GC-CGCGUAGcaUCGCGC-------AGAUG-GCUC- -5'
21320 5' -56.4 NC_004778.3 + 26961 0.67 0.818085
Target:  5'- uGGaCGCG-CGUGucGCGCGUCUGCUa-- -3'
miRNA:   3'- gCC-GCGUaGCAU--CGCGCAGAUGGcuc -5'
21320 5' -56.4 NC_004778.3 + 33769 0.67 0.809375
Target:  5'- uGGCGCAggucgaGUGGCagguuGUGUUUGCCGGc -3'
miRNA:   3'- gCCGCGUag----CAUCG-----CGCAGAUGGCUc -5'
21320 5' -56.4 NC_004778.3 + 69763 0.67 0.809375
Target:  5'- uGGUGCcacuggUGUGGCGCGagaACCGAGa -3'
miRNA:   3'- gCCGCGua----GCAUCGCGCagaUGGCUC- -5'
21320 5' -56.4 NC_004778.3 + 124446 0.68 0.801398
Target:  5'- cCGGCGCcgCGcuucagcauucuugaAGCGCGccgagCUGCCGAu -3'
miRNA:   3'- -GCCGCGuaGCa--------------UCGCGCa----GAUGGCUc -5'
21320 5' -56.4 NC_004778.3 + 40527 0.68 0.794203
Target:  5'- cCGGCGCGUCGcauucauUGGCGCGacuuUgguaaugcugcaaaaCUAUCGAGg -3'
miRNA:   3'- -GCCGCGUAGC-------AUCGCGC----A---------------GAUGGCUC- -5'
21320 5' -56.4 NC_004778.3 + 31234 0.68 0.773011
Target:  5'- aGGCGUugcuGUcCGUGGCGCGcgcacCUcgcGCCGAGa -3'
miRNA:   3'- gCCGCG----UA-GCAUCGCGCa----GA---UGGCUC- -5'
21320 5' -56.4 NC_004778.3 + 69621 0.68 0.773011
Target:  5'- cCGGCGUGUCGUcGCGCcgGUCaACCa-- -3'
miRNA:   3'- -GCCGCGUAGCAuCGCG--CAGaUGGcuc -5'
21320 5' -56.4 NC_004778.3 + 61369 0.68 0.763583
Target:  5'- aCGGCGCc----GGCGCGUCgucGCUGAGc -3'
miRNA:   3'- -GCCGCGuagcaUCGCGCAGa--UGGCUC- -5'
21320 5' -56.4 NC_004778.3 + 30320 0.69 0.724796
Target:  5'- -uGCGCGUCGUcuucggagugGGCGCGUUUGgCGGc -3'
miRNA:   3'- gcCGCGUAGCA----------UCGCGCAGAUgGCUc -5'
21320 5' -56.4 NC_004778.3 + 64954 0.69 0.724796
Target:  5'- uCGGCGCAgc---GCGCGUCgcCCGAa -3'
miRNA:   3'- -GCCGCGUagcauCGCGCAGauGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.