miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21321 3' -51.2 NC_004778.3 + 118919 0.66 0.981145
Target:  5'- ---cGCCGCGCcc-GAAGCGUG--GCa -3'
miRNA:   3'- uuaaCGGCGCGaauUUUCGCGCgaCG- -5'
21321 3' -51.2 NC_004778.3 + 108715 0.66 0.981145
Target:  5'- uGUUGUgGUGUacgu-GGCaGCGCUGCg -3'
miRNA:   3'- uUAACGgCGCGaauuuUCG-CGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 32819 0.66 0.981145
Target:  5'- --cUGCCGCgGCgcgu-GGUGCGUaaugUGCa -3'
miRNA:   3'- uuaACGGCG-CGaauuuUCGCGCG----ACG- -5'
21321 3' -51.2 NC_004778.3 + 31887 0.66 0.981145
Target:  5'- ---cGCCGCuuaaaCUccauAAAGCGCGCcGCg -3'
miRNA:   3'- uuaaCGGCGc----GAau--UUUCGCGCGaCG- -5'
21321 3' -51.2 NC_004778.3 + 88162 0.66 0.981145
Target:  5'- ---cGCUGUGCagucuGAGCGCGCa-- -3'
miRNA:   3'- uuaaCGGCGCGaauu-UUCGCGCGacg -5'
21321 3' -51.2 NC_004778.3 + 17265 0.66 0.981145
Target:  5'- cGUUGCCaCGgU---AGGCGCGCcGCg -3'
miRNA:   3'- uUAACGGcGCgAauuUUCGCGCGaCG- -5'
21321 3' -51.2 NC_004778.3 + 38748 0.66 0.981145
Target:  5'- ---gGCCgGCGCUuugcggaacaUAGuGGaCGCGUUGCg -3'
miRNA:   3'- uuaaCGG-CGCGA----------AUUuUC-GCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 64626 0.66 0.981145
Target:  5'- ---cGaCCGCGcCUUGAugacguGCGUGCaUGCa -3'
miRNA:   3'- uuaaC-GGCGC-GAAUUuu----CGCGCG-ACG- -5'
21321 3' -51.2 NC_004778.3 + 26959 0.66 0.981145
Target:  5'- -uUUGgaCGCGCgu-GucGCGCGuCUGCu -3'
miRNA:   3'- uuAACg-GCGCGaauUuuCGCGC-GACG- -5'
21321 3' -51.2 NC_004778.3 + 107675 0.66 0.981145
Target:  5'- --gUGUCGCGCgacgAAAccuuGCGCGUggagGCc -3'
miRNA:   3'- uuaACGGCGCGaa--UUUu---CGCGCGa---CG- -5'
21321 3' -51.2 NC_004778.3 + 56492 0.66 0.981145
Target:  5'- ---gGuuGCGCcUGAGcaccGCGCGCUaGCu -3'
miRNA:   3'- uuaaCggCGCGaAUUUu---CGCGCGA-CG- -5'
21321 3' -51.2 NC_004778.3 + 125981 0.66 0.980921
Target:  5'- --cUGCaGCGCaUGAAGGCcGCGCaugacgcUGCg -3'
miRNA:   3'- uuaACGgCGCGaAUUUUCG-CGCG-------ACG- -5'
21321 3' -51.2 NC_004778.3 + 112122 0.66 0.979774
Target:  5'- --cUGCCGaCGCUuuggccgcgaucucaUGAAcGGCG-GCUGCu -3'
miRNA:   3'- uuaACGGC-GCGA---------------AUUU-UCGCgCGACG- -5'
21321 3' -51.2 NC_004778.3 + 34408 0.66 0.978821
Target:  5'- ---gGCCGgGCUgcuccGGCaGCGCgGCg -3'
miRNA:   3'- uuaaCGGCgCGAauuu-UCG-CGCGaCG- -5'
21321 3' -51.2 NC_004778.3 + 94872 0.66 0.978821
Target:  5'- ---cGCCcGUGCUgggauugcAGGAGCGCGCacGCu -3'
miRNA:   3'- uuaaCGG-CGCGAa-------UUUUCGCGCGa-CG- -5'
21321 3' -51.2 NC_004778.3 + 64812 0.66 0.978821
Target:  5'- ---gGcCCGCGCcgUUGAAAGCGCacggauguGCaUGCa -3'
miRNA:   3'- uuaaC-GGCGCG--AAUUUUCGCG--------CG-ACG- -5'
21321 3' -51.2 NC_004778.3 + 25043 0.66 0.978821
Target:  5'- -----aCGCGCUUugguucGgGCGCUGCg -3'
miRNA:   3'- uuaacgGCGCGAAuuuu--CgCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 83263 0.66 0.978821
Target:  5'- uGUUGCagaCGCGCggAAcGGCGCgGCgGCu -3'
miRNA:   3'- uUAACG---GCGCGaaUUuUCGCG-CGaCG- -5'
21321 3' -51.2 NC_004778.3 + 39881 0.66 0.978821
Target:  5'- ---gGUgGCGUUUAcgGGCGCGgaaaUGCg -3'
miRNA:   3'- uuaaCGgCGCGAAUuuUCGCGCg---ACG- -5'
21321 3' -51.2 NC_004778.3 + 45384 0.66 0.976291
Target:  5'- ---cGUCGuCGCUacuGGGCGCacuGCUGCu -3'
miRNA:   3'- uuaaCGGC-GCGAauuUUCGCG---CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.