miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21321 3' -51.2 NC_004778.3 + 72755 0.66 0.976291
Target:  5'- ----uCUGCGUUUGGAAGCaacGUGUUGCa -3'
miRNA:   3'- uuaacGGCGCGAAUUUUCG---CGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 107675 0.66 0.981145
Target:  5'- --gUGUCGCGCgacgAAAccuuGCGCGUggagGCc -3'
miRNA:   3'- uuaACGGCGCGaa--UUUu---CGCGCGa---CG- -5'
21321 3' -51.2 NC_004778.3 + 26959 0.66 0.981145
Target:  5'- -uUUGgaCGCGCgu-GucGCGCGuCUGCu -3'
miRNA:   3'- uuAACg-GCGCGaauUuuCGCGC-GACG- -5'
21321 3' -51.2 NC_004778.3 + 34408 0.66 0.978821
Target:  5'- ---gGCCGgGCUgcuccGGCaGCGCgGCg -3'
miRNA:   3'- uuaaCGGCgCGAauuu-UCG-CGCGaCG- -5'
21321 3' -51.2 NC_004778.3 + 4973 0.66 0.97058
Target:  5'- ---cGCCGCGacaUUGccacGCGCGUUGUu -3'
miRNA:   3'- uuaaCGGCGCg--AAUuuu-CGCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 95784 0.66 0.976291
Target:  5'- ---gGCaGCGCgcc--GGcCGCGCUGCg -3'
miRNA:   3'- uuaaCGgCGCGaauuuUC-GCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 45384 0.66 0.976291
Target:  5'- ---cGUCGuCGCUacuGGGCGCacuGCUGCu -3'
miRNA:   3'- uuaaCGGC-GCGAauuUUCGCG---CGACG- -5'
21321 3' -51.2 NC_004778.3 + 124164 0.66 0.973548
Target:  5'- cGUUGCCGUGCacggUGuacuGGGCGuUGUUGUg -3'
miRNA:   3'- uUAACGGCGCGa---AUu---UUCGC-GCGACG- -5'
21321 3' -51.2 NC_004778.3 + 125981 0.66 0.980921
Target:  5'- --cUGCaGCGCaUGAAGGCcGCGCaugacgcUGCg -3'
miRNA:   3'- uuaACGgCGCGaAUUUUCG-CGCG-------ACG- -5'
21321 3' -51.2 NC_004778.3 + 43710 0.66 0.97058
Target:  5'- --cUGCUGCaaGCUUAAuuacGGGgGCGCcGCg -3'
miRNA:   3'- uuaACGGCG--CGAAUU----UUCgCGCGaCG- -5'
21321 3' -51.2 NC_004778.3 + 75752 0.66 0.967382
Target:  5'- --aUGUCGCGCUccucGGCGCugGCgGCa -3'
miRNA:   3'- uuaACGGCGCGAauuuUCGCG--CGaCG- -5'
21321 3' -51.2 NC_004778.3 + 45145 0.66 0.97058
Target:  5'- ---gGCCGCGC--GAAA-UGCGCUGg -3'
miRNA:   3'- uuaaCGGCGCGaaUUUUcGCGCGACg -5'
21321 3' -51.2 NC_004778.3 + 112224 0.66 0.976291
Target:  5'- ---gGCCGCGCgguccaggUGAuagcacGCGgGUUGCg -3'
miRNA:   3'- uuaaCGGCGCGa-------AUUuu----CGCgCGACG- -5'
21321 3' -51.2 NC_004778.3 + 82239 0.66 0.966377
Target:  5'- ---cGCCGCGCUcu-AccaacaacuccuccAGCGUGgUGCg -3'
miRNA:   3'- uuaaCGGCGCGAauuU--------------UCGCGCgACG- -5'
21321 3' -51.2 NC_004778.3 + 25933 0.66 0.970271
Target:  5'- --cUGuuGUGCUagaugauccacauUGGuauGCGCGCUGUa -3'
miRNA:   3'- uuaACggCGCGA-------------AUUuu-CGCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 39881 0.66 0.978821
Target:  5'- ---gGUgGCGUUUAcgGGCGCGgaaaUGCg -3'
miRNA:   3'- uuaaCGgCGCGAAUuuUCGCGCg---ACG- -5'
21321 3' -51.2 NC_004778.3 + 108445 0.66 0.96869
Target:  5'- ---cGCCGCggGCUguauuuguuguacgGAcAGCuGCGCUGCg -3'
miRNA:   3'- uuaaCGGCG--CGAa-------------UUuUCG-CGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 56492 0.66 0.981145
Target:  5'- ---gGuuGCGCcUGAGcaccGCGCGCUaGCu -3'
miRNA:   3'- uuaaCggCGCGaAUUUu---CGCGCGA-CG- -5'
21321 3' -51.2 NC_004778.3 + 83263 0.66 0.978821
Target:  5'- uGUUGCagaCGCGCggAAcGGCGCgGCgGCu -3'
miRNA:   3'- uUAACG---GCGCGaaUUuUCGCG-CGaCG- -5'
21321 3' -51.2 NC_004778.3 + 108715 0.66 0.981145
Target:  5'- uGUUGUgGUGUacgu-GGCaGCGCUGCg -3'
miRNA:   3'- uUAACGgCGCGaauuuUCG-CGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.