miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21321 3' -51.2 NC_004778.3 + 1142 0.7 0.848881
Target:  5'- ---cGCCaCGCgUUGGAGGC-CGCUGCu -3'
miRNA:   3'- uuaaCGGcGCG-AAUUUUCGcGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 1507 0.67 0.956329
Target:  5'- uGUUGCCcCGC-----GGgGCGCUGCc -3'
miRNA:   3'- uUAACGGcGCGaauuuUCgCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 1569 0.76 0.528795
Target:  5'- ---cGgCGUGUUUGAucGGCGCGCUGCu -3'
miRNA:   3'- uuaaCgGCGCGAAUUu-UCGCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 1637 0.78 0.46721
Target:  5'- -cUUGCUGCGCUgcgGAAAGCGaCGCgucguugGCa -3'
miRNA:   3'- uuAACGGCGCGAa--UUUUCGC-GCGa------CG- -5'
21321 3' -51.2 NC_004778.3 + 4973 0.66 0.97058
Target:  5'- ---cGCCGCGacaUUGccacGCGCGUUGUu -3'
miRNA:   3'- uuaaCGGCGCg--AAUuuu-CGCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 5308 0.69 0.915316
Target:  5'- uGUUGCCaauggaaacGCGCUUuucgAGAGGCGCGUauuUGUc -3'
miRNA:   3'- uUAACGG---------CGCGAA----UUUUCGCGCG---ACG- -5'
21321 3' -51.2 NC_004778.3 + 6736 0.69 0.901681
Target:  5'- ---gGCCGCGCgcaaacgcgauuuGCGUGUUGCc -3'
miRNA:   3'- uuaaCGGCGCGaauuuu-------CGCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 7224 0.67 0.947686
Target:  5'- cAGUUGCCGUuggacGCgaaGGAGGaCGUGUUGCu -3'
miRNA:   3'- -UUAACGGCG-----CGaa-UUUUC-GCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 8638 0.7 0.85725
Target:  5'- ---cGCCGCGCUUGcgGAAcGCGC-CUGa -3'
miRNA:   3'- uuaaCGGCGCGAAU--UUU-CGCGcGACg -5'
21321 3' -51.2 NC_004778.3 + 9056 0.69 0.908971
Target:  5'- ---cGCCGCGCUc--GAGCGC-CgGCu -3'
miRNA:   3'- uuaaCGGCGCGAauuUUCGCGcGaCG- -5'
21321 3' -51.2 NC_004778.3 + 9496 0.67 0.960263
Target:  5'- uGAUUGCCGaCGCg--GAGGCguaccGCGC-GCg -3'
miRNA:   3'- -UUAACGGC-GCGaauUUUCG-----CGCGaCG- -5'
21321 3' -51.2 NC_004778.3 + 10406 0.77 0.518304
Target:  5'- ----cCCGCGCgcaaucGGCGCGCUGCg -3'
miRNA:   3'- uuaacGGCGCGaauuu-UCGCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 10736 0.7 0.873285
Target:  5'- ---cGCUGCGCgcucc-GCGgGCUGCc -3'
miRNA:   3'- uuaaCGGCGCGaauuuuCGCgCGACG- -5'
21321 3' -51.2 NC_004778.3 + 10823 0.67 0.963945
Target:  5'- ---gGCUuauuuaaaaaGCGCcu-GGGGCGCGUUGCg -3'
miRNA:   3'- uuaaCGG----------CGCGaauUUUCGCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 10883 0.67 0.952138
Target:  5'- ---aGCC-CGCg---GAGCGCGCaGCg -3'
miRNA:   3'- uuaaCGGcGCGaauuUUCGCGCGaCG- -5'
21321 3' -51.2 NC_004778.3 + 11558 0.66 0.973548
Target:  5'- ---cGCgGCGC---AAAGCGUGCauuUGCg -3'
miRNA:   3'- uuaaCGgCGCGaauUUUCGCGCG---ACG- -5'
21321 3' -51.2 NC_004778.3 + 12053 0.72 0.790396
Target:  5'- cAGUUGgCGCGCUUGcaacgccgguugcAAGCGUGCgUGCa -3'
miRNA:   3'- -UUAACgGCGCGAAUu------------UUCGCGCG-ACG- -5'
21321 3' -51.2 NC_004778.3 + 14526 0.68 0.932723
Target:  5'- aGGUUGuuGuUGCUgucgcGCGCGUUGCa -3'
miRNA:   3'- -UUAACggC-GCGAauuuuCGCGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 15597 0.77 0.477229
Target:  5'- ---gGUCGCGCg--GAGGCgGCGCUGCg -3'
miRNA:   3'- uuaaCGGCGCGaauUUUCG-CGCGACG- -5'
21321 3' -51.2 NC_004778.3 + 15691 0.69 0.895477
Target:  5'- -----aCGUGCUcGAcgauGGCGCGCUGCu -3'
miRNA:   3'- uuaacgGCGCGAaUUu---UCGCGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.