miRNA display CGI


Results 1 - 20 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21321 5' -59.4 NC_004778.3 + 90716 0.66 0.714876
Target:  5'- -gGCGCuGCGCUCgGCgGCG-AGCgCUGCc -3'
miRNA:   3'- uaCGCG-CGCGGG-CGgCGUuUUG-GACG- -5'
21321 5' -59.4 NC_004778.3 + 52371 0.66 0.714876
Target:  5'- -cGCGCGCaGCgaUGUCGCAAcaaCUGCg -3'
miRNA:   3'- uaCGCGCG-CGg-GCGGCGUUuugGACG- -5'
21321 5' -59.4 NC_004778.3 + 15306 0.66 0.71388
Target:  5'- -cGCGCGUGuCCCGCacgaaGuCGGAGauuuucgugaguuCCUGCa -3'
miRNA:   3'- uaCGCGCGC-GGGCGg----C-GUUUU-------------GGACG- -5'
21321 5' -59.4 NC_004778.3 + 82724 0.66 0.712883
Target:  5'- gGUGCGgcaaCGCGuucaaacggucccCCCGCCGCGAAuuccgacGCCgaaGCg -3'
miRNA:   3'- -UACGC----GCGC-------------GGGCGGCGUUU-------UGGa--CG- -5'
21321 5' -59.4 NC_004778.3 + 98762 0.66 0.704886
Target:  5'- -cGCGCGUGCaaGCCGCc--ACCa-- -3'
miRNA:   3'- uaCGCGCGCGggCGGCGuuuUGGacg -5'
21321 5' -59.4 NC_004778.3 + 107922 0.66 0.704886
Target:  5'- -cGCGaCGcCGCCCGacgagCGCGAcgcgGugCUGCg -3'
miRNA:   3'- uaCGC-GC-GCGGGCg----GCGUU----UugGACG- -5'
21321 5' -59.4 NC_004778.3 + 124724 0.66 0.704886
Target:  5'- uUGCGCGCGCgCCuaCGU--GACUcgGCg -3'
miRNA:   3'- uACGCGCGCG-GGcgGCGuuUUGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 99190 0.66 0.704886
Target:  5'- uGUGgGCGUGagCGCCGCGAcgcguuGCCggGCg -3'
miRNA:   3'- -UACgCGCGCggGCGGCGUUu-----UGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 25895 0.66 0.704886
Target:  5'- cGUGgGCGCuggcacGCUCGUCGCugggcGCUUGCa -3'
miRNA:   3'- -UACgCGCG------CGGGCGGCGuuu--UGGACG- -5'
21321 5' -59.4 NC_004778.3 + 89909 0.66 0.704886
Target:  5'- uUGCGCGCG-UUGuuGUAaaAAugCUGCa -3'
miRNA:   3'- uACGCGCGCgGGCggCGU--UUugGACG- -5'
21321 5' -59.4 NC_004778.3 + 4960 0.66 0.704886
Target:  5'- -cGCGUcauGCGUgCGCCGCGAcauuGCCacGCg -3'
miRNA:   3'- uaCGCG---CGCGgGCGGCGUUu---UGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 36528 0.66 0.703884
Target:  5'- -gGCGC-CGCUuuggaccaugacgCGCCGCAuuugGAACCgGCg -3'
miRNA:   3'- uaCGCGcGCGG-------------GCGGCGU----UUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 16423 0.66 0.695842
Target:  5'- -cGCGUcguaGUGCCCGUCGCAcgaguaguuuauuguGGCgCUGCu -3'
miRNA:   3'- uaCGCG----CGCGGGCGGCGUu--------------UUG-GACG- -5'
21321 5' -59.4 NC_004778.3 + 32452 0.66 0.694835
Target:  5'- cAUGCG-GCGCagCCGCUGCGugucGCCUuuGCa -3'
miRNA:   3'- -UACGCgCGCG--GGCGGCGUuu--UGGA--CG- -5'
21321 5' -59.4 NC_004778.3 + 33474 0.66 0.694835
Target:  5'- -gGCgGCGUGCUCGCCGaCGAcauggGACUcgGCa -3'
miRNA:   3'- uaCG-CGCGCGGGCGGC-GUU-----UUGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 114939 0.66 0.694835
Target:  5'- -gGCGUGCGCaCCGCgGCcuuuGCCa-- -3'
miRNA:   3'- uaCGCGCGCG-GGCGgCGuuu-UGGacg -5'
21321 5' -59.4 NC_004778.3 + 17439 0.66 0.694835
Target:  5'- cUGCG-GC-CCCGCCGUuucaaCUGCg -3'
miRNA:   3'- uACGCgCGcGGGCGGCGuuuugGACG- -5'
21321 5' -59.4 NC_004778.3 + 45582 0.66 0.693826
Target:  5'- -aGCGCuccuccaGCGCCUGgCGCGccuUCUGCa -3'
miRNA:   3'- uaCGCG-------CGCGGGCgGCGUuuuGGACG- -5'
21321 5' -59.4 NC_004778.3 + 12048 0.66 0.693826
Target:  5'- -gGCGCGCuugcaacGCCgGuuGCAAGcguGCgUGCa -3'
miRNA:   3'- uaCGCGCG-------CGGgCggCGUUU---UGgACG- -5'
21321 5' -59.4 NC_004778.3 + 70165 0.66 0.688778
Target:  5'- gAUGCGCGCcagaauggcgucgcuGCCCaGuuGCAGGuUUUGCg -3'
miRNA:   3'- -UACGCGCG---------------CGGG-CggCGUUUuGGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.