miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21321 5' -59.4 NC_004778.3 + 91468 0.66 0.684731
Target:  5'- uGUGCGUGCGCCaaauauugUGUgGCGAAGgcuuuugcagUCUGCg -3'
miRNA:   3'- -UACGCGCGCGG--------GCGgCGUUUU----------GGACG- -5'
21321 5' -59.4 NC_004778.3 + 62390 0.66 0.684731
Target:  5'- aAUuaGCGCcCCCGuuGUAGAACUuuUGCg -3'
miRNA:   3'- -UAcgCGCGcGGGCggCGUUUUGG--ACG- -5'
21321 5' -59.4 NC_004778.3 + 29477 0.66 0.684731
Target:  5'- -aGCGCGCGCCgCGCCaccuuCGAAgauuauugGCCgagaGCg -3'
miRNA:   3'- uaCGCGCGCGG-GCGGc----GUUU--------UGGa---CG- -5'
21321 5' -59.4 NC_004778.3 + 16161 0.66 0.683718
Target:  5'- uGUGCGaCGUGCgCGUCGCGGAuaacaacGCCaaGCa -3'
miRNA:   3'- -UACGC-GCGCGgGCGGCGUUU-------UGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 110318 0.66 0.683718
Target:  5'- -cGCGUGCGCCUuuaguuuGUCGUAcgGCagCUGCa -3'
miRNA:   3'- uaCGCGCGCGGG-------CGGCGUuuUG--GACG- -5'
21321 5' -59.4 NC_004778.3 + 64945 0.66 0.674584
Target:  5'- -cGCGCGuCGCCCGaacaaGCAuauuGGCCaucgGCg -3'
miRNA:   3'- uaCGCGC-GCGGGCgg---CGUu---UUGGa---CG- -5'
21321 5' -59.4 NC_004778.3 + 18644 0.66 0.674584
Target:  5'- -cGCGCGCcgccuaccGCCCccaagaaaguuGCCGCGAAGCaacGCc -3'
miRNA:   3'- uaCGCGCG--------CGGG-----------CGGCGUUUUGga-CG- -5'
21321 5' -59.4 NC_004778.3 + 27696 0.66 0.674584
Target:  5'- -aGCGUG-GCCaguGCCGCGuucgcCCUGCu -3'
miRNA:   3'- uaCGCGCgCGGg--CGGCGUuuu--GGACG- -5'
21321 5' -59.4 NC_004778.3 + 38238 0.66 0.674584
Target:  5'- cGUGCuguuGCGCGUCgCGCCGCA--GCg-GCa -3'
miRNA:   3'- -UACG----CGCGCGG-GCGGCGUuuUGgaCG- -5'
21321 5' -59.4 NC_004778.3 + 107693 0.66 0.672549
Target:  5'- uUGCGCGUGgaggCCGCCacgcgcggucagaGCAaaaacgcauugugGAACCUGCu -3'
miRNA:   3'- uACGCGCGCg---GGCGG-------------CGU-------------UUUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 36646 0.66 0.672549
Target:  5'- uUGCGCGUGCCCaGCaccaccucguccaCGCAgucguuuAGGCCgGCc -3'
miRNA:   3'- uACGCGCGCGGG-CG-------------GCGU-------UUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 8045 0.67 0.668478
Target:  5'- -aGCGUGCaCCCaucGCCGCgGgcugaucauaaacgcGAGCCUGCg -3'
miRNA:   3'- uaCGCGCGcGGG---CGGCG-U---------------UUUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 96892 0.67 0.664401
Target:  5'- uAUGCGCguacgGCGCCguCGUCGCGGGuuAUCUGUc -3'
miRNA:   3'- -UACGCG-----CGCGG--GCGGCGUUU--UGGACG- -5'
21321 5' -59.4 NC_004778.3 + 121763 0.67 0.664401
Target:  5'- -gGCGUggaccGCGCgCUGCaGCAGAACCcGCg -3'
miRNA:   3'- uaCGCG-----CGCG-GGCGgCGUUUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 21505 0.67 0.664401
Target:  5'- -gGCGC-CGCcaCCGCCGgcCGAAACCUaaGCg -3'
miRNA:   3'- uaCGCGcGCG--GGCGGC--GUUUUGGA--CG- -5'
21321 5' -59.4 NC_004778.3 + 121414 0.67 0.663381
Target:  5'- gGUGUGCcggcagaGCGacCCCGCCGCAGAccccgacucGCC-GCa -3'
miRNA:   3'- -UACGCG-------CGC--GGGCGGCGUUU---------UGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 106467 0.67 0.654193
Target:  5'- cUGCGCGCGCaaaaCGC-GCAAcuauuGGCC-GCg -3'
miRNA:   3'- uACGCGCGCGg---GCGgCGUU-----UUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 45623 0.67 0.654193
Target:  5'- -cGCGCGaguuGCCCGaCCGCGGcAGCgaGUu -3'
miRNA:   3'- uaCGCGCg---CGGGC-GGCGUU-UUGgaCG- -5'
21321 5' -59.4 NC_004778.3 + 26984 0.67 0.654193
Target:  5'- -cGCGCGCGUaggaGCCauguCAAAACCcGCg -3'
miRNA:   3'- uaCGCGCGCGgg--CGGc---GUUUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 121619 0.67 0.654193
Target:  5'- -aGCGCGCGguCCaCGCCGUc-GGCCgaGCg -3'
miRNA:   3'- uaCGCGCGC--GG-GCGGCGuuUUGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.