miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21321 5' -59.4 NC_004778.3 + 2407 0.7 0.447661
Target:  5'- cGUGCcCGCGCCCGacgaccacuuuauugCGCGuuACCUGUg -3'
miRNA:   3'- -UACGcGCGCGGGCg--------------GCGUuuUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 4960 0.66 0.704886
Target:  5'- -cGCGUcauGCGUgCGCCGCGAcauuGCCacGCg -3'
miRNA:   3'- uaCGCG---CGCGgGCGGCGUUu---UGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 7299 0.72 0.374912
Target:  5'- -gGCGCGcCGCCCGCCGaGAcggauuccuuugguAGCUUGUa -3'
miRNA:   3'- uaCGCGC-GCGGGCGGCgUU--------------UUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 7362 0.72 0.358016
Target:  5'- aAUGCGCGUGCCgguCGaCCGCGuaccgcuuguacGCCUGCu -3'
miRNA:   3'- -UACGCGCGCGG---GC-GGCGUuu----------UGGACG- -5'
21321 5' -59.4 NC_004778.3 + 8045 0.67 0.668478
Target:  5'- -aGCGUGCaCCCaucGCCGCgGgcugaucauaaacgcGAGCCUGCg -3'
miRNA:   3'- uaCGCGCGcGGG---CGGCG-U---------------UUUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 8403 0.69 0.532526
Target:  5'- --uUGCGCGUCCGCUGCGAguAACgucaaUGCa -3'
miRNA:   3'- uacGCGCGCGGGCGGCGUU--UUGg----ACG- -5'
21321 5' -59.4 NC_004778.3 + 8953 0.77 0.176734
Target:  5'- cUGaGCGCGCCCGCCGCcucgccgcuGAAgCUGCu -3'
miRNA:   3'- uACgCGCGCGGGCGGCGu--------UUUgGACG- -5'
21321 5' -59.4 NC_004778.3 + 9572 0.67 0.633732
Target:  5'- -cGUGCGCGCCaCGCC---AAACUgcUGCa -3'
miRNA:   3'- uaCGCGCGCGG-GCGGcguUUUGG--ACG- -5'
21321 5' -59.4 NC_004778.3 + 10250 0.73 0.315619
Target:  5'- aGUGCGCagcGCGCCgauUGCgCGCGGGACCgGCg -3'
miRNA:   3'- -UACGCG---CGCGG---GCG-GCGUUUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 10404 0.68 0.572561
Target:  5'- -cGCGCGCaaucgGCgCGCUGCGcacuAAacACCUGCu -3'
miRNA:   3'- uaCGCGCG-----CGgGCGGCGU----UU--UGGACG- -5'
21321 5' -59.4 NC_004778.3 + 10758 0.73 0.322904
Target:  5'- cGUGUGCGCG-CCGCCGUAAAcGCCa-- -3'
miRNA:   3'- -UACGCGCGCgGGCGGCGUUU-UGGacg -5'
21321 5' -59.4 NC_004778.3 + 12048 0.66 0.693826
Target:  5'- -gGCGCGCuugcaacGCCgGuuGCAAGcguGCgUGCa -3'
miRNA:   3'- uaCGCGCG-------CGGgCggCGUUU---UGgACG- -5'
21321 5' -59.4 NC_004778.3 + 14956 0.68 0.60203
Target:  5'- -cGCGCGUGUcgucguaCUGCaCGCGGGACCgUGUg -3'
miRNA:   3'- uaCGCGCGCG-------GGCG-GCGUUUUGG-ACG- -5'
21321 5' -59.4 NC_004778.3 + 15060 0.68 0.592856
Target:  5'- cGUGUagGCGCGCuCCGCCaCGuGACCgaGCa -3'
miRNA:   3'- -UACG--CGCGCG-GGCGGcGUuUUGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 15306 0.66 0.71388
Target:  5'- -cGCGCGUGuCCCGCacgaaGuCGGAGauuuucgugaguuCCUGCa -3'
miRNA:   3'- uaCGCGCGC-GGGCGg----C-GUUUU-------------GGACG- -5'
21321 5' -59.4 NC_004778.3 + 16161 0.66 0.683718
Target:  5'- uGUGCGaCGUGCgCGUCGCGGAuaacaacGCCaaGCa -3'
miRNA:   3'- -UACGC-GCGCGgGCGGCGUUU-------UGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 16423 0.66 0.695842
Target:  5'- -cGCGUcguaGUGCCCGUCGCAcgaguaguuuauuguGGCgCUGCu -3'
miRNA:   3'- uaCGCG----CGCGGGCGGCGUu--------------UUG-GACG- -5'
21321 5' -59.4 NC_004778.3 + 17107 0.68 0.561467
Target:  5'- uGUGCGCGCGgCgCGCCuaccgugGCAAcGCCguUGCc -3'
miRNA:   3'- -UACGCGCGCgG-GCGG-------CGUUuUGG--ACG- -5'
21321 5' -59.4 NC_004778.3 + 17439 0.66 0.694835
Target:  5'- cUGCG-GC-CCCGCCGUuucaaCUGCg -3'
miRNA:   3'- uACGCgCGcGGGCGGCGuuuugGACG- -5'
21321 5' -59.4 NC_004778.3 + 18644 0.66 0.674584
Target:  5'- -cGCGCGCcgccuaccGCCCccaagaaaguuGCCGCGAAGCaacGCc -3'
miRNA:   3'- uaCGCGCG--------CGGG-----------CGGCGUUUUGga-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.