miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21321 5' -59.4 NC_004778.3 + 95005 0.72 0.337088
Target:  5'- -cGCGCGCGCCgugCGCCGaCGGGcaggugcGCCUGg -3'
miRNA:   3'- uaCGCGCGCGG---GCGGC-GUUU-------UGGACg -5'
21321 5' -59.4 NC_004778.3 + 45328 0.74 0.274521
Target:  5'- cUGUGUGCGCUCGCCGCcGGugUUGa -3'
miRNA:   3'- uACGCGCGCGGGCGGCGuUUugGACg -5'
21321 5' -59.4 NC_004778.3 + 88219 0.74 0.287725
Target:  5'- -gGCGCGgcCGCCCGUcaaaCGCGAAACCacgUGCg -3'
miRNA:   3'- uaCGCGC--GCGGGCG----GCGUUUUGG---ACG- -5'
21321 5' -59.4 NC_004778.3 + 32742 0.73 0.308459
Target:  5'- cGUGCGCGCGacacaCCGCCGguAAAaauUGCg -3'
miRNA:   3'- -UACGCGCGCg----GGCGGCguUUUgg-ACG- -5'
21321 5' -59.4 NC_004778.3 + 10250 0.73 0.315619
Target:  5'- aGUGCGCagcGCGCCgauUGCgCGCGGGACCgGCg -3'
miRNA:   3'- -UACGCG---CGCGG---GCG-GCGUUUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 33007 0.73 0.315619
Target:  5'- -cGCGUGCGCaUCGCCGCGuu-CCaGCa -3'
miRNA:   3'- uaCGCGCGCG-GGCGGCGUuuuGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 26722 0.73 0.322169
Target:  5'- uUGCGCaaaaCCGCCGCAAAcgccgcgGCCUGCa -3'
miRNA:   3'- uACGCGcgcgGGCGGCGUUU-------UGGACG- -5'
21321 5' -59.4 NC_004778.3 + 10758 0.73 0.322904
Target:  5'- cGUGUGCGCG-CCGCCGUAAAcGCCa-- -3'
miRNA:   3'- -UACGCGCGCgGGCGGCGUUU-UGGacg -5'
21321 5' -59.4 NC_004778.3 + 35201 0.73 0.330313
Target:  5'- -cGCaGCuugacuuugGCGCCCGCCGUGucguACCUGCc -3'
miRNA:   3'- uaCG-CG---------CGCGGGCGGCGUuu--UGGACG- -5'
21321 5' -59.4 NC_004778.3 + 32911 0.74 0.268104
Target:  5'- -cGCGUGCacGCCCGCagaCGCGAAACaCUGUg -3'
miRNA:   3'- uaCGCGCG--CGGGCG---GCGUUUUG-GACG- -5'
21321 5' -59.4 NC_004778.3 + 64156 0.74 0.268104
Target:  5'- -cGCGuCGCGCCCgugGCCGCcGAGCUUGa -3'
miRNA:   3'- uaCGC-GCGCGGG---CGGCGuUUUGGACg -5'
21321 5' -59.4 NC_004778.3 + 22298 0.74 0.261807
Target:  5'- --uUGCGCGCCCGCCaccaacgacaugGUcuGGCCUGCa -3'
miRNA:   3'- uacGCGCGCGGGCGG------------CGuuUUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 46415 0.8 0.108291
Target:  5'- -gGCGCGUGCCgCGUCGCAcAACCUGa -3'
miRNA:   3'- uaCGCGCGCGG-GCGGCGUuUUGGACg -5'
21321 5' -59.4 NC_004778.3 + 57948 0.8 0.114121
Target:  5'- -cGCGCGCGCCUgcgcugcgcugGCUGCAAAGCCaugGCa -3'
miRNA:   3'- uaCGCGCGCGGG-----------CGGCGUUUUGGa--CG- -5'
21321 5' -59.4 NC_004778.3 + 77385 0.79 0.133414
Target:  5'- aAUGCGCacGCGCCgGCCGCGucGCUUGUg -3'
miRNA:   3'- -UACGCG--CGCGGgCGGCGUuuUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 31250 0.76 0.200291
Target:  5'- -gGCGCGCGCaccucgCGCCGaGAAACUUGCg -3'
miRNA:   3'- uaCGCGCGCGg-----GCGGCgUUUUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 61647 0.76 0.205319
Target:  5'- -aGCGCGCGCCaaCGCCGCGcgcaugcuGGGCCaGCc -3'
miRNA:   3'- uaCGCGCGCGG--GCGGCGU--------UUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 119923 0.76 0.208903
Target:  5'- aGUGCGCGaGCagggcaucgauauuCCGCCGCAcguGAACCUGUg -3'
miRNA:   3'- -UACGCGCgCG--------------GGCGGCGU---UUUGGACG- -5'
21321 5' -59.4 NC_004778.3 + 106297 0.75 0.221062
Target:  5'- -aGCGCccGUGCCCGCCGCAGccCCaGCc -3'
miRNA:   3'- uaCGCG--CGCGGGCGGCGUUuuGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 58259 0.75 0.23212
Target:  5'- cGUGUGCGCagaauGCUCGCCGCGcuucAAGCgCUGCu -3'
miRNA:   3'- -UACGCGCG-----CGGGCGGCGU----UUUG-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.