miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21321 5' -59.4 NC_004778.3 + 52371 0.66 0.714876
Target:  5'- -cGCGCGCaGCgaUGUCGCAAcaaCUGCg -3'
miRNA:   3'- uaCGCGCG-CGg-GCGGCGUUuugGACG- -5'
21321 5' -59.4 NC_004778.3 + 45623 0.67 0.654193
Target:  5'- -cGCGCGaguuGCCCGaCCGCGGcAGCgaGUu -3'
miRNA:   3'- uaCGCGCg---CGGGC-GGCGUU-UUGgaCG- -5'
21321 5' -59.4 NC_004778.3 + 95934 0.67 0.643967
Target:  5'- -cGCaGCGCGgCCGgCGCGcuGCC-GCg -3'
miRNA:   3'- uaCG-CGCGCgGGCgGCGUuuUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 8953 0.77 0.176734
Target:  5'- cUGaGCGCGCCCGCCGCcucgccgcuGAAgCUGCu -3'
miRNA:   3'- uACgCGCGCGGGCGGCGu--------UUUgGACG- -5'
21321 5' -59.4 NC_004778.3 + 107922 0.66 0.704886
Target:  5'- -cGCGaCGcCGCCCGacgagCGCGAcgcgGugCUGCg -3'
miRNA:   3'- uaCGC-GC-GCGGGCg----GCGUU----UugGACG- -5'
21321 5' -59.4 NC_004778.3 + 124724 0.66 0.704886
Target:  5'- uUGCGCGCGCgCCuaCGU--GACUcgGCg -3'
miRNA:   3'- uACGCGCGCG-GGcgGCGuuUUGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 12048 0.66 0.693826
Target:  5'- -gGCGCGCuugcaacGCCgGuuGCAAGcguGCgUGCa -3'
miRNA:   3'- uaCGCGCG-------CGGgCggCGUUU---UGgACG- -5'
21321 5' -59.4 NC_004778.3 + 70165 0.66 0.688778
Target:  5'- gAUGCGCGCcagaauggcgucgcuGCCCaGuuGCAGGuUUUGCg -3'
miRNA:   3'- -UACGCGCG---------------CGGG-CggCGUUUuGGACG- -5'
21321 5' -59.4 NC_004778.3 + 110318 0.66 0.683718
Target:  5'- -cGCGUGCGCCUuuaguuuGUCGUAcgGCagCUGCa -3'
miRNA:   3'- uaCGCGCGCGGG-------CGGCGUuuUG--GACG- -5'
21321 5' -59.4 NC_004778.3 + 26984 0.67 0.654193
Target:  5'- -cGCGCGCGUaggaGCCauguCAAAACCcGCg -3'
miRNA:   3'- uaCGCGCGCGgg--CGGc---GUUUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 64945 0.66 0.674584
Target:  5'- -cGCGCGuCGCCCGaacaaGCAuauuGGCCaucgGCg -3'
miRNA:   3'- uaCGCGC-GCGGGCgg---CGUu---UUGGa---CG- -5'
21321 5' -59.4 NC_004778.3 + 29477 0.66 0.684731
Target:  5'- -aGCGCGCGCCgCGCCaccuuCGAAgauuauugGCCgagaGCg -3'
miRNA:   3'- uaCGCGCGCGG-GCGGc----GUUU--------UGGa---CG- -5'
21321 5' -59.4 NC_004778.3 + 90716 0.66 0.714876
Target:  5'- -gGCGCuGCGCUCgGCgGCG-AGCgCUGCc -3'
miRNA:   3'- uaCGCG-CGCGGG-CGgCGUuUUG-GACG- -5'
21321 5' -59.4 NC_004778.3 + 121763 0.67 0.664401
Target:  5'- -gGCGUggaccGCGCgCUGCaGCAGAACCcGCg -3'
miRNA:   3'- uaCGCG-----CGCG-GGCGgCGUUUUGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 15306 0.66 0.71388
Target:  5'- -cGCGCGUGuCCCGCacgaaGuCGGAGauuuucgugaguuCCUGCa -3'
miRNA:   3'- uaCGCGCGC-GGGCGg----C-GUUUU-------------GGACG- -5'
21321 5' -59.4 NC_004778.3 + 91468 0.66 0.684731
Target:  5'- uGUGCGUGCGCCaaauauugUGUgGCGAAGgcuuuugcagUCUGCg -3'
miRNA:   3'- -UACGCGCGCGG--------GCGgCGUUUU----------GGACG- -5'
21321 5' -59.4 NC_004778.3 + 121414 0.67 0.663381
Target:  5'- gGUGUGCcggcagaGCGacCCCGCCGCAGAccccgacucGCC-GCa -3'
miRNA:   3'- -UACGCG-------CGC--GGGCGGCGUUU---------UGGaCG- -5'
21321 5' -59.4 NC_004778.3 + 126121 0.67 0.643967
Target:  5'- cAUGCGCuGCaGCuCCGCCGCcuuuuccuCCUGa -3'
miRNA:   3'- -UACGCG-CG-CG-GGCGGCGuuuu----GGACg -5'
21321 5' -59.4 NC_004778.3 + 99190 0.66 0.704886
Target:  5'- uGUGgGCGUGagCGCCGCGAcgcguuGCCggGCg -3'
miRNA:   3'- -UACgCGCGCggGCGGCGUUu-----UGGa-CG- -5'
21321 5' -59.4 NC_004778.3 + 16423 0.66 0.695842
Target:  5'- -cGCGUcguaGUGCCCGUCGCAcgaguaguuuauuguGGCgCUGCu -3'
miRNA:   3'- uaCGCG----CGCGGGCGGCGUu--------------UUG-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.