miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21322 3' -52.3 NC_004778.3 + 8692 0.66 0.977323
Target:  5'- aCCgUAAuACAaaUCGCGCCG-GgUUACg -3'
miRNA:   3'- gGGgGUUuUGU--AGCGCGGCaCgAAUG- -5'
21322 3' -52.3 NC_004778.3 + 58427 0.66 0.97475
Target:  5'- gCgUCCAAAACcuuUUGCGCCcUGCUgUGCa -3'
miRNA:   3'- -GgGGGUUUUGu--AGCGCGGcACGA-AUG- -5'
21322 3' -52.3 NC_004778.3 + 111914 0.66 0.97475
Target:  5'- -gCCCAAugg--CGCGCUGUGCgugaucgUGCa -3'
miRNA:   3'- ggGGGUUuuguaGCGCGGCACGa------AUG- -5'
21322 3' -52.3 NC_004778.3 + 14112 0.66 0.97475
Target:  5'- aCCgCGAGACca-GCGUCGUGCUc-- -3'
miRNA:   3'- gGGgGUUUUGuagCGCGGCACGAaug -5'
21322 3' -52.3 NC_004778.3 + 112994 0.66 0.971971
Target:  5'- gCUCCGAAAC-UgGCGCCGU--UUGCg -3'
miRNA:   3'- gGGGGUUUUGuAgCGCGGCAcgAAUG- -5'
21322 3' -52.3 NC_004778.3 + 77355 0.66 0.971971
Target:  5'- uCCUCCuuGugG-CGCGCCGcGCgcuggUGCa -3'
miRNA:   3'- -GGGGGuuUugUaGCGCGGCaCGa----AUG- -5'
21322 3' -52.3 NC_004778.3 + 118494 0.66 0.968977
Target:  5'- gUCCCAAAACAU-GUGCacucuGUGCggGCa -3'
miRNA:   3'- gGGGGUUUUGUAgCGCGg----CACGaaUG- -5'
21322 3' -52.3 NC_004778.3 + 29482 0.66 0.968977
Target:  5'- aCCCCA--GCG-CGCGCCGcGCc--- -3'
miRNA:   3'- gGGGGUuuUGUaGCGCGGCaCGaaug -5'
21322 3' -52.3 NC_004778.3 + 119017 0.67 0.958646
Target:  5'- gUCCUCAGuuGCGUgcgCGCGCCGUGUc--- -3'
miRNA:   3'- -GGGGGUUu-UGUA---GCGCGGCACGaaug -5'
21322 3' -52.3 NC_004778.3 + 23333 0.67 0.954732
Target:  5'- -gCCCAAAu--UUGCGCCGUGUacucgUUGCc -3'
miRNA:   3'- ggGGGUUUuguAGCGCGGCACG-----AAUG- -5'
21322 3' -52.3 NC_004778.3 + 5448 0.67 0.950575
Target:  5'- gCCCCAAAACAaaggcaacugCGCGCC-UGCcaugGCc -3'
miRNA:   3'- gGGGGUUUUGUa---------GCGCGGcACGaa--UG- -5'
21322 3' -52.3 NC_004778.3 + 36173 0.67 0.94617
Target:  5'- aCgCCCAugcggauGGCGUUGCccGCCGUGCggUGCc -3'
miRNA:   3'- -GgGGGUu------UUGUAGCG--CGGCACGa-AUG- -5'
21322 3' -52.3 NC_004778.3 + 110217 0.67 0.94617
Target:  5'- gCCUCCGAGuCGUgCGCGCUGU-UUUACa -3'
miRNA:   3'- -GGGGGUUUuGUA-GCGCGGCAcGAAUG- -5'
21322 3' -52.3 NC_004778.3 + 114389 0.68 0.9386
Target:  5'- gCCCgAAuacgguuucagguuuGACAaCGUGCCG-GCUUGCa -3'
miRNA:   3'- gGGGgUU---------------UUGUaGCGCGGCaCGAAUG- -5'
21322 3' -52.3 NC_004778.3 + 43358 0.68 0.936606
Target:  5'- -aCUCGGAAUuUCGCGCCGUGgUguUGCc -3'
miRNA:   3'- ggGGGUUUUGuAGCGCGGCACgA--AUG- -5'
21322 3' -52.3 NC_004778.3 + 23741 0.68 0.931443
Target:  5'- uUCUgCAGcAGCGcgUGCGCCGaUGCUUGCa -3'
miRNA:   3'- -GGGgGUU-UUGUa-GCGCGGC-ACGAAUG- -5'
21322 3' -52.3 NC_004778.3 + 124239 0.68 0.931443
Target:  5'- gCCgCCAAccgcgcGCAUcagCGCGCCGUGCaucUGCa -3'
miRNA:   3'- -GGgGGUUu-----UGUA---GCGCGGCACGa--AUG- -5'
21322 3' -52.3 NC_004778.3 + 16837 0.69 0.895106
Target:  5'- aCCCCAAAACAaCGCGCCuaaa-UACg -3'
miRNA:   3'- gGGGGUUUUGUaGCGCGGcacgaAUG- -5'
21322 3' -52.3 NC_004778.3 + 33630 0.69 0.888173
Target:  5'- gUCCCAugucgucggcGAGCA-CGcCGCCGUGCggACg -3'
miRNA:   3'- gGGGGU----------UUUGUaGC-GCGGCACGaaUG- -5'
21322 3' -52.3 NC_004778.3 + 96013 0.69 0.888173
Target:  5'- aCCgCUGGucAUGUCGC-CCGUGCUUACg -3'
miRNA:   3'- -GGgGGUUu-UGUAGCGcGGCACGAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.