miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21322 5' -60.1 NC_004778.3 + 10919 0.66 0.639019
Target:  5'- gUUGCUCGauggcguuuacgGCGGCGCGcacacgGCagCCCGCGGa -3'
miRNA:   3'- -AACGAGC------------UGUCGCGC------UGagGGGCGUU- -5'
21322 5' -60.1 NC_004778.3 + 43129 0.66 0.628725
Target:  5'- -cGCuUCGACGGCGCcGCggcgCgCCGCAc -3'
miRNA:   3'- aaCG-AGCUGUCGCGcUGa---GgGGCGUu -5'
21322 5' -60.1 NC_004778.3 + 95779 0.66 0.618432
Target:  5'- -cGCgCGGCAGCGCGccggccgcgcuGCgCCCCGUGGa -3'
miRNA:   3'- aaCGaGCUGUCGCGC-----------UGaGGGGCGUU- -5'
21322 5' -60.1 NC_004778.3 + 94843 0.66 0.618432
Target:  5'- -cGCUCGcgguuCAGCGCGAagcaguacgaUUCgCCCGCGc -3'
miRNA:   3'- aaCGAGCu----GUCGCGCU----------GAG-GGGCGUu -5'
21322 5' -60.1 NC_004778.3 + 83272 0.67 0.597888
Target:  5'- -cGCgCGgaACGGCGCGGCggCUCCGCGc -3'
miRNA:   3'- aaCGaGC--UGUCGCGCUGa-GGGGCGUu -5'
21322 5' -60.1 NC_004778.3 + 42223 0.67 0.577445
Target:  5'- uUUGCUCGAUGGCuugucccuGCG-CUUCCUGCGu -3'
miRNA:   3'- -AACGAGCUGUCG--------CGCuGAGGGGCGUu -5'
21322 5' -60.1 NC_004778.3 + 15693 0.68 0.507463
Target:  5'- gUGCUCGACgauGGCGCG-CUgCUgCGCGAg -3'
miRNA:   3'- aACGAGCUG---UCGCGCuGA-GGgGCGUU- -5'
21322 5' -60.1 NC_004778.3 + 2331 0.69 0.469103
Target:  5'- gUGC-CGACGGCaCGAUUCgCCUGCAGc -3'
miRNA:   3'- aACGaGCUGUCGcGCUGAG-GGGCGUU- -5'
21322 5' -60.1 NC_004778.3 + 121411 0.69 0.469103
Target:  5'- gUGC-CGGCAGaGCGACcCCgCCGCAGa -3'
miRNA:   3'- aACGaGCUGUCgCGCUGaGG-GGCGUU- -5'
21322 5' -60.1 NC_004778.3 + 36238 0.7 0.405803
Target:  5'- -cGCUCGGCucuuGCGCGAUcUgCCGCAAc -3'
miRNA:   3'- aaCGAGCUGu---CGCGCUGaGgGGCGUU- -5'
21322 5' -60.1 NC_004778.3 + 126164 0.7 0.397205
Target:  5'- uUUGC-CGGCAG-GaCGACUCCCaCGCAGc -3'
miRNA:   3'- -AACGaGCUGUCgC-GCUGAGGG-GCGUU- -5'
21322 5' -60.1 NC_004778.3 + 15441 0.71 0.340405
Target:  5'- cUGCUCG-CAGCGcCGcCUCCgCGCGAc -3'
miRNA:   3'- aACGAGCuGUCGC-GCuGAGGgGCGUU- -5'
21322 5' -60.1 NC_004778.3 + 34415 0.76 0.177552
Target:  5'- cUGCUcCGGCAGCGCGGCgUgCCCGUAc -3'
miRNA:   3'- aACGA-GCUGUCGCGCUG-AgGGGCGUu -5'
21322 5' -60.1 NC_004778.3 + 70165 1.04 0.001774
Target:  5'- aUUGCUCGACAGCGCGACUCCCCGCAAg -3'
miRNA:   3'- -AACGAGCUGUCGCGCUGAGGGGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.