miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21323 3' -52.5 NC_004778.3 + 43109 0.66 0.977856
Target:  5'- aCCGgcGGcUGCUGcgcaaGCGCuucgacgGCGCCGCg -3'
miRNA:   3'- -GGCaaCC-ACGGC-----UGCGuaa----UGUGGUG- -5'
21323 3' -52.5 NC_004778.3 + 110296 0.66 0.977856
Target:  5'- aCUGgcGGuUGCCGGgGCcuuUUGCugGCCACa -3'
miRNA:   3'- -GGCaaCC-ACGGCUgCGu--AAUG--UGGUG- -5'
21323 3' -52.5 NC_004778.3 + 2324 0.66 0.977856
Target:  5'- gCGUacGGUGCCGACgGCAcgauuCGCCuGCa -3'
miRNA:   3'- gGCAa-CCACGGCUG-CGUaau--GUGG-UG- -5'
21323 3' -52.5 NC_004778.3 + 10527 0.66 0.977856
Target:  5'- aCCGUaaaGUGCCGAuCGCcgUuuGCCAa -3'
miRNA:   3'- -GGCAac-CACGGCU-GCGuaAugUGGUg -5'
21323 3' -52.5 NC_004778.3 + 80760 0.66 0.977856
Target:  5'- aCG-UGGUGCCGcACGC--UGCACa-- -3'
miRNA:   3'- gGCaACCACGGC-UGCGuaAUGUGgug -5'
21323 3' -52.5 NC_004778.3 + 84472 0.66 0.977856
Target:  5'- ----cGGUGCCccUGCuggUGCACCGCa -3'
miRNA:   3'- ggcaaCCACGGcuGCGua-AUGUGGUG- -5'
21323 3' -52.5 NC_004778.3 + 18549 0.66 0.977856
Target:  5'- aCGUUgGGUGCC-ACGgaGUUcCGCCGCu -3'
miRNA:   3'- gGCAA-CCACGGcUGCg-UAAuGUGGUG- -5'
21323 3' -52.5 NC_004778.3 + 75143 0.66 0.975342
Target:  5'- aCGUUGGccGCCGGgGCGggcucACugGCCGCa -3'
miRNA:   3'- gGCAACCa-CGGCUgCGUaa---UG--UGGUG- -5'
21323 3' -52.5 NC_004778.3 + 36678 0.66 0.975342
Target:  5'- gUCGUUuaGGccgGCCGugGgCA--ACACCGCg -3'
miRNA:   3'- -GGCAA--CCa--CGGCugC-GUaaUGUGGUG- -5'
21323 3' -52.5 NC_004778.3 + 60512 0.66 0.975342
Target:  5'- aCCGcUGGaGCUGGCGCGcgaaaucUACGCgCGCa -3'
miRNA:   3'- -GGCaACCaCGGCUGCGUa------AUGUG-GUG- -5'
21323 3' -52.5 NC_004778.3 + 70766 0.66 0.975342
Target:  5'- aCCG-UGGUGUa-AUGCGUcgGCACCAa -3'
miRNA:   3'- -GGCaACCACGgcUGCGUAa-UGUGGUg -5'
21323 3' -52.5 NC_004778.3 + 9486 0.66 0.975342
Target:  5'- --aUUGGcgaggugauUGCCGACGCGgagGCguACCGCg -3'
miRNA:   3'- ggcAACC---------ACGGCUGCGUaa-UG--UGGUG- -5'
21323 3' -52.5 NC_004778.3 + 121580 0.66 0.972626
Target:  5'- aCGgcGGcgacacgGCCGACGCGUgccugcUGCucaGCCGCa -3'
miRNA:   3'- gGCaaCCa------CGGCUGCGUA------AUG---UGGUG- -5'
21323 3' -52.5 NC_004778.3 + 61789 0.66 0.9697
Target:  5'- gCGUUGGcgcgcGCUGGCuGCGcgGCGCCAa -3'
miRNA:   3'- gGCAACCa----CGGCUG-CGUaaUGUGGUg -5'
21323 3' -52.5 NC_004778.3 + 122988 0.66 0.9697
Target:  5'- -gGUUGGcGCCGACGCAUgaaaugUAUCGa -3'
miRNA:   3'- ggCAACCaCGGCUGCGUAau----GUGGUg -5'
21323 3' -52.5 NC_004778.3 + 107099 0.66 0.966557
Target:  5'- ----cGGUucGCCGACGCGUU-UGCCAUa -3'
miRNA:   3'- ggcaaCCA--CGGCUGCGUAAuGUGGUG- -5'
21323 3' -52.5 NC_004778.3 + 23334 0.67 0.96319
Target:  5'- cCUGUgcuaGCCGACGCGgu-CACCAUc -3'
miRNA:   3'- -GGCAaccaCGGCUGCGUaauGUGGUG- -5'
21323 3' -52.5 NC_004778.3 + 129286 0.67 0.96319
Target:  5'- gCCGaacaaaUGCUGGCGCugUACGCCGCg -3'
miRNA:   3'- -GGCaacc--ACGGCUGCGuaAUGUGGUG- -5'
21323 3' -52.5 NC_004778.3 + 29534 0.67 0.955368
Target:  5'- gCCGUggUGGUGUCGcccggcaaacCGCGUUGCguguacaGCCGCu -3'
miRNA:   3'- -GGCA--ACCACGGCu---------GCGUAAUG-------UGGUG- -5'
21323 3' -52.5 NC_004778.3 + 107486 0.67 0.95497
Target:  5'- gCCGcuaacgccGCCGACGUA-UGCGCCGCa -3'
miRNA:   3'- -GGCaacca---CGGCUGCGUaAUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.