miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21324 3' -60 NC_004778.3 + 116788 0.66 0.738117
Target:  5'- -uGGGCGcGUaaaacgCGUUCAGCGUGCCg -3'
miRNA:   3'- guCCCGCaCGcua---GCGGGUUGCGCGG- -5'
21324 3' -60 NC_004778.3 + 35799 0.66 0.738117
Target:  5'- --uGGUGUGUGuuucggcUGCCCGACccgGCGCCg -3'
miRNA:   3'- gucCCGCACGCua-----GCGGGUUG---CGCGG- -5'
21324 3' -60 NC_004778.3 + 95941 0.66 0.738117
Target:  5'- aCGGaGGCGcaGCG--CGgCCGGCGCGCUg -3'
miRNA:   3'- -GUC-CCGCa-CGCuaGCgGGUUGCGCGG- -5'
21324 3' -60 NC_004778.3 + 122066 0.66 0.738117
Target:  5'- gCGGGGUucacaaauGUGCucaGAgCGCCCAgcACGCGUa -3'
miRNA:   3'- -GUCCCG--------CACG---CUaGCGGGU--UGCGCGg -5'
21324 3' -60 NC_004778.3 + 107277 0.66 0.728511
Target:  5'- uGGGGUGcGCGAaCGCUacaacaAACGUGCa -3'
miRNA:   3'- gUCCCGCaCGCUaGCGGg-----UUGCGCGg -5'
21324 3' -60 NC_004778.3 + 27851 0.66 0.728511
Target:  5'- gCAGGGCGaacGCGGcacuggccaCGCUCGuCGUGCCc -3'
miRNA:   3'- -GUCCCGCa--CGCUa--------GCGGGUuGCGCGG- -5'
21324 3' -60 NC_004778.3 + 106868 0.66 0.728511
Target:  5'- cCAcGGCGaccaGCaGGUUGUUCAGCGUGCCg -3'
miRNA:   3'- -GUcCCGCa---CG-CUAGCGGGUUGCGCGG- -5'
21324 3' -60 NC_004778.3 + 64805 0.66 0.718825
Target:  5'- -cGGGCGacgcgcgcUGCGccgauUUGCCCAagggaACGgGCCa -3'
miRNA:   3'- guCCCGC--------ACGCu----AGCGGGU-----UGCgCGG- -5'
21324 3' -60 NC_004778.3 + 85558 0.66 0.718825
Target:  5'- -uGGGCGacguguacgGCG-UCGCCCAcGCGgGCg -3'
miRNA:   3'- guCCCGCa--------CGCuAGCGGGU-UGCgCGg -5'
21324 3' -60 NC_004778.3 + 88568 0.66 0.718825
Target:  5'- gCAGGcuGCGUGCcaGUCaacauGCCCGACGUGgCa -3'
miRNA:   3'- -GUCC--CGCACGc-UAG-----CGGGUUGCGCgG- -5'
21324 3' -60 NC_004778.3 + 95302 0.66 0.718825
Target:  5'- uCGGcGGuCGUGUGGUggaacaaacgGCCCGACGUGCg -3'
miRNA:   3'- -GUC-CC-GCACGCUAg---------CGGGUUGCGCGg -5'
21324 3' -60 NC_004778.3 + 118424 0.66 0.709068
Target:  5'- -uGGGUGcG-GGUUGCaCGGCGCGCCu -3'
miRNA:   3'- guCCCGCaCgCUAGCGgGUUGCGCGG- -5'
21324 3' -60 NC_004778.3 + 25873 0.66 0.709068
Target:  5'- uUAGGGUGUGUGccggCGCgaCCGugGgCGCUg -3'
miRNA:   3'- -GUCCCGCACGCua--GCG--GGUugC-GCGG- -5'
21324 3' -60 NC_004778.3 + 58318 0.66 0.709068
Target:  5'- gCGGcGGCGgcgGCGA-CGUCgGgugGCGCGCUg -3'
miRNA:   3'- -GUC-CCGCa--CGCUaGCGGgU---UGCGCGG- -5'
21324 3' -60 NC_004778.3 + 48937 0.66 0.699249
Target:  5'- -uGGGCGUGgGAga--CgGugGCGCCg -3'
miRNA:   3'- guCCCGCACgCUagcgGgUugCGCGG- -5'
21324 3' -60 NC_004778.3 + 110105 0.66 0.699249
Target:  5'- --cGGCGUGCG--CGCCgAGCGCuugggcaccgGCCg -3'
miRNA:   3'- gucCCGCACGCuaGCGGgUUGCG----------CGG- -5'
21324 3' -60 NC_004778.3 + 77333 0.66 0.688385
Target:  5'- --cGGCG-GCGAguccuccucgUCGUCCuccuuguGGCGCGCCg -3'
miRNA:   3'- gucCCGCaCGCU----------AGCGGG-------UUGCGCGG- -5'
21324 3' -60 NC_004778.3 + 19198 0.67 0.679456
Target:  5'- -uGGGCGgcgGUGGUgGUuuGACaaGCGCCa -3'
miRNA:   3'- guCCCGCa--CGCUAgCGggUUG--CGCGG- -5'
21324 3' -60 NC_004778.3 + 102238 0.67 0.679456
Target:  5'- aAGGGUa-GCaAagGCCCAacACGCGCCg -3'
miRNA:   3'- gUCCCGcaCGcUagCGGGU--UGCGCGG- -5'
21324 3' -60 NC_004778.3 + 36461 0.67 0.679456
Target:  5'- aCGGcGGUGUgGUGggCGCCaCcACGCGCUu -3'
miRNA:   3'- -GUC-CCGCA-CGCuaGCGG-GuUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.