miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21324 5' -53 NC_004778.3 + 32484 0.66 0.978672
Target:  5'- aCCAGCGGucguggcacgcgAGcuugaacaUGGCugCGUCAUGCGCGCu -3'
miRNA:   3'- -GGUUGCU------------UC--------ACUG--GCAGUGCGCGUGc -5'
21324 5' -53 NC_004778.3 + 33995 0.66 0.978672
Target:  5'- aCCAGCGGuuaucggcguugAGcgcgcaGGCUGcCGCGUGCACGu -3'
miRNA:   3'- -GGUUGCU------------UCa-----CUGGCaGUGCGCGUGC- -5'
21324 5' -53 NC_004778.3 + 29728 0.66 0.97844
Target:  5'- gCAGCcuaaucGUGAauggguuUCGUUACGCGCACGu -3'
miRNA:   3'- gGUUGcuu---CACU-------GGCAGUGCGCGUGC- -5'
21324 5' -53 NC_004778.3 + 112375 0.66 0.976265
Target:  5'- gCCAGCu---UGACCG-CAaGCGCGCGg -3'
miRNA:   3'- -GGUUGcuucACUGGCaGUgCGCGUGC- -5'
21324 5' -53 NC_004778.3 + 77484 0.66 0.976265
Target:  5'- aCGACGAGGagGACuCGcCGCcgauagcggaaGCGCGCGu -3'
miRNA:   3'- gGUUGCUUCa-CUG-GCaGUG-----------CGCGUGC- -5'
21324 5' -53 NC_004778.3 + 119277 0.66 0.976265
Target:  5'- gCAuuGCGAGGU-ACUG-CGCGCGuCGCGg -3'
miRNA:   3'- gGU--UGCUUCAcUGGCaGUGCGC-GUGC- -5'
21324 5' -53 NC_004778.3 + 88475 0.66 0.976265
Target:  5'- gCCAACcGAGUGGCCGuggacggugucuUCACGaGCgGCGu -3'
miRNA:   3'- -GGUUGcUUCACUGGC------------AGUGCgCG-UGC- -5'
21324 5' -53 NC_004778.3 + 95622 0.66 0.976265
Target:  5'- cCCGGCGAgggccguugcauAGUGGCCaauUCggACGCGUGCa -3'
miRNA:   3'- -GGUUGCU------------UCACUGGc--AG--UGCGCGUGc -5'
21324 5' -53 NC_004778.3 + 23612 0.66 0.972009
Target:  5'- aCGACGAcAGUGAaaCCGagCAaaacuugacguugucCGCGCACGa -3'
miRNA:   3'- gGUUGCU-UCACU--GGCa-GU---------------GCGCGUGC- -5'
21324 5' -53 NC_004778.3 + 49042 0.66 0.970864
Target:  5'- aCGACG-AGUG-CCGaUACGCGCGu- -3'
miRNA:   3'- gGUUGCuUCACuGGCaGUGCGCGUgc -5'
21324 5' -53 NC_004778.3 + 36506 0.66 0.967856
Target:  5'- aCGuUGGAGUGcagcguGCCGUUGCGCGaCAUGa -3'
miRNA:   3'- gGUuGCUUCAC------UGGCAGUGCGC-GUGC- -5'
21324 5' -53 NC_004778.3 + 62838 0.66 0.967856
Target:  5'- aCAAC-AAGUGcACCGacUACGUGCACa -3'
miRNA:   3'- gGUUGcUUCAC-UGGCa-GUGCGCGUGc -5'
21324 5' -53 NC_004778.3 + 107594 0.66 0.967543
Target:  5'- gCCAcguacgcACGGucAGUGACauUgACGCGCGCGc -3'
miRNA:   3'- -GGU-------UGCU--UCACUGgcAgUGCGCGUGC- -5'
21324 5' -53 NC_004778.3 + 95179 0.67 0.962595
Target:  5'- ---cCGggGUGGuccaggcgcaccugcCCGUCggcgcacgGCGCGCGCGg -3'
miRNA:   3'- gguuGCuuCACU---------------GGCAG--------UGCGCGUGC- -5'
21324 5' -53 NC_004778.3 + 66114 0.67 0.961192
Target:  5'- aCGGCGAugacGUGGCCGUCGuaaaagaaccCGUGC-CGu -3'
miRNA:   3'- gGUUGCUu---CACUGGCAGU----------GCGCGuGC- -5'
21324 5' -53 NC_004778.3 + 1152 0.67 0.961192
Target:  5'- uUCGGCG----GACCGcCACGCGUugGa -3'
miRNA:   3'- -GGUUGCuucaCUGGCaGUGCGCGugC- -5'
21324 5' -53 NC_004778.3 + 47392 0.67 0.957525
Target:  5'- --cGCGAcGUG-UCG-CACGCGCGCGc -3'
miRNA:   3'- gguUGCUuCACuGGCaGUGCGCGUGC- -5'
21324 5' -53 NC_004778.3 + 47180 0.67 0.957525
Target:  5'- uUCGACGGcaAGU--CCGUCACGaugaCGCACGu -3'
miRNA:   3'- -GGUUGCU--UCAcuGGCAGUGC----GCGUGC- -5'
21324 5' -53 NC_004778.3 + 46546 0.67 0.957525
Target:  5'- gCCAAa-GAGUGGCagagcaaGUCGCGCGaACGg -3'
miRNA:   3'- -GGUUgcUUCACUGg------CAGUGCGCgUGC- -5'
21324 5' -53 NC_004778.3 + 107682 0.67 0.953627
Target:  5'- gCGACGAaaccuugcgcguGGaGGCCGcCACGCGCGg- -3'
miRNA:   3'- gGUUGCU------------UCaCUGGCaGUGCGCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.