miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21325 3' -57.4 NC_004778.3 + 107287 0.66 0.827567
Target:  5'- aUCgGAuaCGUGGgGUGCGCGAacGCUACa -3'
miRNA:   3'- cAGgCUc-GCGCUgUACGCGCU--CGAUG- -5'
21325 3' -57.4 NC_004778.3 + 62736 0.66 0.827567
Target:  5'- cGUCUuGGCaaGCGACAUgGCGCuacuGCUGCg -3'
miRNA:   3'- -CAGGcUCG--CGCUGUA-CGCGcu--CGAUG- -5'
21325 3' -57.4 NC_004778.3 + 48141 0.66 0.827567
Target:  5'- uGUCUGuuGCGCG-CGUGCGCGcGUacugGCg -3'
miRNA:   3'- -CAGGCu-CGCGCuGUACGCGCuCGa---UG- -5'
21325 3' -57.4 NC_004778.3 + 45063 0.66 0.818979
Target:  5'- --aCGAGCGCuacCAUcagcGCGCGAGCgGCg -3'
miRNA:   3'- cagGCUCGCGcu-GUA----CGCGCUCGaUG- -5'
21325 3' -57.4 NC_004778.3 + 27693 0.66 0.818979
Target:  5'- --aCGAGCGUGGCcaGUGCcGCGuucgcccuGCUGCu -3'
miRNA:   3'- cagGCUCGCGCUG--UACG-CGCu-------CGAUG- -5'
21325 3' -57.4 NC_004778.3 + 116046 0.66 0.81811
Target:  5'- gGUCCGGcGUGCGcAUGUGUGCGgccccuaGGCUAg -3'
miRNA:   3'- -CAGGCU-CGCGC-UGUACGCGC-------UCGAUg -5'
21325 3' -57.4 NC_004778.3 + 45142 0.66 0.810217
Target:  5'- -cCCGGccGCGCGAaAUGCgcuggaucGCGAGCUAg -3'
miRNA:   3'- caGGCU--CGCGCUgUACG--------CGCUCGAUg -5'
21325 3' -57.4 NC_004778.3 + 95766 0.66 0.804881
Target:  5'- -gCCGGGCGCuAUccGCGCGGcagcgcgccggccgcGCUGCg -3'
miRNA:   3'- caGGCUCGCGcUGuaCGCGCU---------------CGAUG- -5'
21325 3' -57.4 NC_004778.3 + 16236 0.66 0.801291
Target:  5'- -cCCGAGUugaaagugGCGAC--GCGCGGGCuUGCc -3'
miRNA:   3'- caGGCUCG--------CGCUGuaCGCGCUCG-AUG- -5'
21325 3' -57.4 NC_004778.3 + 49852 0.66 0.801291
Target:  5'- --aCGGGCGCG-Cu--UGCGGGCUGCa -3'
miRNA:   3'- cagGCUCGCGCuGuacGCGCUCGAUG- -5'
21325 3' -57.4 NC_004778.3 + 116792 0.66 0.80039
Target:  5'- aGUuuGGGCGCGuaaaacgcguucaGCGUGC-CGgucAGCUGCa -3'
miRNA:   3'- -CAggCUCGCGC-------------UGUACGcGC---UCGAUG- -5'
21325 3' -57.4 NC_004778.3 + 111574 0.66 0.79221
Target:  5'- -aCCGGGCGCGccaaagucacggACGgcGCGCGGuGUUACg -3'
miRNA:   3'- caGGCUCGCGC------------UGUa-CGCGCU-CGAUG- -5'
21325 3' -57.4 NC_004778.3 + 61798 0.67 0.773617
Target:  5'- --aUGcGCGCGGCGUugGCGCGcgcuGGCUGCg -3'
miRNA:   3'- cagGCuCGCGCUGUA--CGCGC----UCGAUG- -5'
21325 3' -57.4 NC_004778.3 + 95935 0.67 0.773617
Target:  5'- --gCGcAGCGCGGCcgGCGCGcuGCcGCg -3'
miRNA:   3'- cagGC-UCGCGCUGuaCGCGCu-CGaUG- -5'
21325 3' -57.4 NC_004778.3 + 16150 0.67 0.764123
Target:  5'- cUUCGAcucgcuGUGCGACGUGCGCGucGCg-- -3'
miRNA:   3'- cAGGCU------CGCGCUGUACGCGCu-CGaug -5'
21325 3' -57.4 NC_004778.3 + 45641 0.67 0.764123
Target:  5'- cUUCGGacaGCGACGguccGCGCGAGUUGCc -3'
miRNA:   3'- cAGGCUcg-CGCUGUa---CGCGCUCGAUG- -5'
21325 3' -57.4 NC_004778.3 + 99064 0.67 0.764123
Target:  5'- -cCCG-GCGCGuccguACGUGgGCGAGUUGu -3'
miRNA:   3'- caGGCuCGCGC-----UGUACgCGCUCGAUg -5'
21325 3' -57.4 NC_004778.3 + 2450 0.67 0.764123
Target:  5'- -cCCGAGUGCGGCAcGCcGCuGGUUAUc -3'
miRNA:   3'- caGGCUCGCGCUGUaCG-CGcUCGAUG- -5'
21325 3' -57.4 NC_004778.3 + 5287 0.67 0.758369
Target:  5'- uUUCGAgagGCGCGuauuugucuauuucgGCcaGCGCGAGCUGCa -3'
miRNA:   3'- cAGGCU---CGCGC---------------UGuaCGCGCUCGAUG- -5'
21325 3' -57.4 NC_004778.3 + 47385 0.67 0.753543
Target:  5'- uUuuGGGCGCGACGUgucgcacGCGCGcGCg-- -3'
miRNA:   3'- cAggCUCGCGCUGUA-------CGCGCuCGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.