miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21325 5' -55.5 NC_004778.3 + 25963 0.66 0.895625
Target:  5'- cGCGcUGUACGCcuuaacggcguugagCGUGcUGCACGuCGCAc -3'
miRNA:   3'- -CGC-ACGUGCGa--------------GCAC-AUGUGC-GCGUu -5'
21325 5' -55.5 NC_004778.3 + 37819 0.66 0.890874
Target:  5'- gGCGUcucaaacaGCGCGCggcgacacgCGUGgugcuuaucgacgcGCACGCGCAGa -3'
miRNA:   3'- -CGCA--------CGUGCGa--------GCACa-------------UGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 16877 0.66 0.888106
Target:  5'- uUGUGCAUGCgaugUCGUuUAaACGCGCAAu -3'
miRNA:   3'- cGCACGUGCG----AGCAcAUgUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 98934 0.66 0.883884
Target:  5'- cGCGUGUuguCGCgUCGcUGgggaugguggcggcuUGCACGCGCGc -3'
miRNA:   3'- -CGCACGu--GCG-AGC-AC---------------AUGUGCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 14743 0.66 0.881022
Target:  5'- cGUGUGUgACGC-CGUGUugGCGUcCAGg -3'
miRNA:   3'- -CGCACG-UGCGaGCACAugUGCGcGUU- -5'
21325 5' -55.5 NC_004778.3 + 121852 0.66 0.881022
Target:  5'- aCGUGCccgACGCgggccugcaCGUGaagcGCACGCGCAGc -3'
miRNA:   3'- cGCACG---UGCGa--------GCACa---UGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 14804 0.66 0.881022
Target:  5'- cGCGUGCA-GUaCGacgACACGCGCGg -3'
miRNA:   3'- -CGCACGUgCGaGCacaUGUGCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 72360 0.66 0.881022
Target:  5'- -aGUGCGcCGaCUUGg--ACGCGCGCAAc -3'
miRNA:   3'- cgCACGU-GC-GAGCacaUGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 34430 0.66 0.873708
Target:  5'- gGCGUGCcCGUacUGcUGUACACGgGCAc -3'
miRNA:   3'- -CGCACGuGCGa-GC-ACAUGUGCgCGUu -5'
21325 5' -55.5 NC_004778.3 + 95988 0.66 0.873708
Target:  5'- aCG-GCGCGCaUCGUGuUGCGCuCGCGGu -3'
miRNA:   3'- cGCaCGUGCG-AGCAC-AUGUGcGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 119040 0.66 0.873708
Target:  5'- uGgGUGCACGCaaagacgcauUUGUccucaguugcGUGCGCGCGCc- -3'
miRNA:   3'- -CgCACGUGCG----------AGCA----------CAUGUGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 111037 0.66 0.866168
Target:  5'- gGCGcugGCcaGCaGUUCGcUGUACACGCGCc- -3'
miRNA:   3'- -CGCa--CG--UG-CGAGC-ACAUGUGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 14687 0.66 0.866168
Target:  5'- cGCGgucguccgGCACGa-CGUGacGCACGCGCGu -3'
miRNA:   3'- -CGCa-------CGUGCgaGCACa-UGUGCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 34294 0.66 0.866168
Target:  5'- gGCGacCGCG-UCGUcGUACGCGCGCu- -3'
miRNA:   3'- -CGCacGUGCgAGCA-CAUGUGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 55278 0.66 0.866168
Target:  5'- -aGUGUACGagUCGcugGCGCGCGCAGc -3'
miRNA:   3'- cgCACGUGCg-AGCacaUGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 88009 0.66 0.866168
Target:  5'- cUGUGCGCGCUCagacUGCACaGCGUAc -3'
miRNA:   3'- cGCACGUGCGAGcac-AUGUG-CGCGUu -5'
21325 5' -55.5 NC_004778.3 + 27945 0.67 0.842254
Target:  5'- cCGUGCAUGCg-GUGcaGCGCGgGCAGg -3'
miRNA:   3'- cGCACGUGCGagCACa-UGUGCgCGUU- -5'
21325 5' -55.5 NC_004778.3 + 127077 0.67 0.842254
Target:  5'- uCGUGCACGCcCGgcgaGUGCuCGCGUu- -3'
miRNA:   3'- cGCACGUGCGaGCa---CAUGuGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 36040 0.67 0.841425
Target:  5'- gGCGUGC-CGUaCGUGUacagccagcugcuACGCGgGCAu -3'
miRNA:   3'- -CGCACGuGCGaGCACA-------------UGUGCgCGUu -5'
21325 5' -55.5 NC_004778.3 + 98740 0.67 0.833875
Target:  5'- aGCGUGC---UUCGUGUuguagcagcGCGCGUGCAAg -3'
miRNA:   3'- -CGCACGugcGAGCACA---------UGUGCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.