miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21325 5' -55.5 NC_004778.3 + 73504 1.08 0.002746
Target:  5'- cGCGUGCACGCUCGUGUACACGCGCAAu -3'
miRNA:   3'- -CGCACGUGCGAGCACAUGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 1979 0.79 0.252522
Target:  5'- cGCGUGCACaGCUCGUGccgcUGCG-GCGCAAg -3'
miRNA:   3'- -CGCACGUG-CGAGCAC----AUGUgCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 38252 0.77 0.320734
Target:  5'- gGCGUGCGCGCUagCGUGcuguUGCGCGuCGCGc -3'
miRNA:   3'- -CGCACGUGCGA--GCAC----AUGUGC-GCGUu -5'
21325 5' -55.5 NC_004778.3 + 116007 0.76 0.359693
Target:  5'- gGgGUGcCugGCUUGaUGUACAUGCGCGAg -3'
miRNA:   3'- -CgCAC-GugCGAGC-ACAUGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 47371 0.75 0.409751
Target:  5'- aGCGUGCggcguuauuuuggGCGCgaCGUGUcGCACGCGCGc -3'
miRNA:   3'- -CGCACG-------------UGCGa-GCACA-UGUGCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 48130 0.74 0.446991
Target:  5'- cGCGUGCGCGC----GUACugGCGCGu -3'
miRNA:   3'- -CGCACGUGCGagcaCAUGugCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 28141 0.73 0.494826
Target:  5'- -gGUGCGCGCuucgUCGUGUuCGCGCuGCGAa -3'
miRNA:   3'- cgCACGUGCG----AGCACAuGUGCG-CGUU- -5'
21325 5' -55.5 NC_004778.3 + 94712 0.73 0.52462
Target:  5'- aGCGUGCGCGCUCcUGcaaucccaGCACGgGCGu -3'
miRNA:   3'- -CGCACGUGCGAGcACa-------UGUGCgCGUu -5'
21325 5' -55.5 NC_004778.3 + 2129 0.72 0.534705
Target:  5'- aGCGUGCACGa--GcUGUGCACGCGg-- -3'
miRNA:   3'- -CGCACGUGCgagC-ACAUGUGCGCguu -5'
21325 5' -55.5 NC_004778.3 + 103304 0.72 0.56534
Target:  5'- cGCGUGCAUcaGCUCGagGUuCAUGCGUAGc -3'
miRNA:   3'- -CGCACGUG--CGAGCa-CAuGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 124058 0.72 0.586018
Target:  5'- uCGUGCAagUGCUCGUGcagaUGCACgGCGCGc -3'
miRNA:   3'- cGCACGU--GCGAGCAC----AUGUG-CGCGUu -5'
21325 5' -55.5 NC_004778.3 + 33961 0.71 0.59225
Target:  5'- cGCGUGCACGUcCGUGUAaugguucuuuaugACGUGCGc -3'
miRNA:   3'- -CGCACGUGCGaGCACAUg------------UGCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 58167 0.71 0.606834
Target:  5'- aCGUGCACGCa-GUG-GCAUGCGCu- -3'
miRNA:   3'- cGCACGUGCGagCACaUGUGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 31237 0.71 0.617276
Target:  5'- -aGUGCGCGCUUuuUGUGCACGacCGCAGc -3'
miRNA:   3'- cgCACGUGCGAGc-ACAUGUGC--GCGUU- -5'
21325 5' -55.5 NC_004778.3 + 128310 0.71 0.617276
Target:  5'- gGCGUGUACGUUUGUGgcgACGUGUGUAGc -3'
miRNA:   3'- -CGCACGUGCGAGCACa--UGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 77367 0.71 0.617276
Target:  5'- cGCGccGCGCGCUgGUGcaaugcGCACGCGCc- -3'
miRNA:   3'- -CGCa-CGUGCGAgCACa-----UGUGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 37999 0.71 0.621457
Target:  5'- cGCGUGCGCGUcgauaagcaccacgCGUGUcgcCGCGCGCu- -3'
miRNA:   3'- -CGCACGUGCGa-------------GCACAu--GUGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 94851 0.71 0.627729
Target:  5'- aGCGcGCACGCUCGcgGUuCA-GCGCGAa -3'
miRNA:   3'- -CGCaCGUGCGAGCa-CAuGUgCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 8478 0.7 0.648638
Target:  5'- cGCGUGCACGUaUGccuUGUACACaGCGUg- -3'
miRNA:   3'- -CGCACGUGCGaGC---ACAUGUG-CGCGuu -5'
21325 5' -55.5 NC_004778.3 + 124723 0.7 0.659077
Target:  5'- uGCGcGCGCGCcuaCGUGacucgGCGCGCGCu- -3'
miRNA:   3'- -CGCaCGUGCGa--GCACa----UGUGCGCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.