miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21325 5' -55.5 NC_004778.3 + 127077 0.67 0.842254
Target:  5'- uCGUGCACGCcCGgcgaGUGCuCGCGUu- -3'
miRNA:   3'- cGCACGUGCGaGCa---CAUGuGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 83848 0.68 0.80762
Target:  5'- aGCGgcucGCACGCUUuuuguuuaGUGUGCAuUGCGUAu -3'
miRNA:   3'- -CGCa---CGUGCGAG--------CACAUGU-GCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 107785 0.67 0.813888
Target:  5'- gGCGUcGCguuGCGCUCGUcUGCgcuagcguuuggcaACGCGCAGg -3'
miRNA:   3'- -CGCA-CG---UGCGAGCAcAUG--------------UGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 25899 0.67 0.816549
Target:  5'- gGCGcugGCACGCUCGUcGcUGgGCGCuuGCAGg -3'
miRNA:   3'- -CGCa--CGUGCGAGCA-C-AUgUGCG--CGUU- -5'
21325 5' -55.5 NC_004778.3 + 111592 0.67 0.825303
Target:  5'- aCGgacgGCGCGCg-GUGuUACGCGCGCc- -3'
miRNA:   3'- cGCa---CGUGCGagCAC-AUGUGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 107116 0.67 0.833875
Target:  5'- -aGUGCACGUUUGuUGUAgCGuuCGCGCAc -3'
miRNA:   3'- cgCACGUGCGAGC-ACAU-GU--GCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 29415 0.67 0.833875
Target:  5'- gGCGUGCucguuaaaGCGCUCGUuuuGUgcaauccuGCugGCGUAu -3'
miRNA:   3'- -CGCACG--------UGCGAGCA---CA--------UGugCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 98740 0.67 0.833875
Target:  5'- aGCGUGC---UUCGUGUuguagcagcGCGCGUGCAAg -3'
miRNA:   3'- -CGCACGugcGAGCACA---------UGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 36040 0.67 0.841425
Target:  5'- gGCGUGC-CGUaCGUGUacagccagcugcuACGCGgGCAu -3'
miRNA:   3'- -CGCACGuGCGaGCACA-------------UGUGCgCGUu -5'
21325 5' -55.5 NC_004778.3 + 56963 0.68 0.798524
Target:  5'- cGUGUGC-CGCggCGUGaACACgGCGCu- -3'
miRNA:   3'- -CGCACGuGCGa-GCACaUGUG-CGCGuu -5'
21325 5' -55.5 NC_004778.3 + 47976 0.68 0.770334
Target:  5'- ---aGCACGCgccaGUACGCGCGCAc -3'
miRNA:   3'- cgcaCGUGCGagcaCAUGUGCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 32901 0.69 0.730992
Target:  5'- cCGUGCACGg-CGcGUGCACGCccGCAGa -3'
miRNA:   3'- cGCACGUGCgaGCaCAUGUGCG--CGUU- -5'
21325 5' -55.5 NC_004778.3 + 1979 0.79 0.252522
Target:  5'- cGCGUGCACaGCUCGUGccgcUGCG-GCGCAAg -3'
miRNA:   3'- -CGCACGUG-CGAGCAC----AUGUgCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 47371 0.75 0.409751
Target:  5'- aGCGUGCggcguuauuuuggGCGCgaCGUGUcGCACGCGCGc -3'
miRNA:   3'- -CGCACG-------------UGCGa-GCACA-UGUGCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 94712 0.73 0.52462
Target:  5'- aGCGUGCGCGCUCcUGcaaucccaGCACGgGCGu -3'
miRNA:   3'- -CGCACGUGCGAGcACa-------UGUGCgCGUu -5'
21325 5' -55.5 NC_004778.3 + 103304 0.72 0.56534
Target:  5'- cGCGUGCAUcaGCUCGagGUuCAUGCGUAGc -3'
miRNA:   3'- -CGCACGUG--CGAGCa-CAuGUGCGCGUU- -5'
21325 5' -55.5 NC_004778.3 + 124058 0.72 0.586018
Target:  5'- uCGUGCAagUGCUCGUGcagaUGCACgGCGCGc -3'
miRNA:   3'- cGCACGU--GCGAGCAC----AUGUG-CGCGUu -5'
21325 5' -55.5 NC_004778.3 + 77367 0.71 0.617276
Target:  5'- cGCGccGCGCGCUgGUGcaaugcGCACGCGCc- -3'
miRNA:   3'- -CGCa-CGUGCGAgCACa-----UGUGCGCGuu -5'
21325 5' -55.5 NC_004778.3 + 91178 0.7 0.669493
Target:  5'- cCGUcGgGCGCUCGcGUuCACGCGCAc -3'
miRNA:   3'- cGCA-CgUGCGAGCaCAuGUGCGCGUu -5'
21325 5' -55.5 NC_004778.3 + 10736 0.7 0.669493
Target:  5'- cGC-UGCGCGCUccgcgggcugcCGUGUGCGCGcCGCc- -3'
miRNA:   3'- -CGcACGUGCGA-----------GCACAUGUGC-GCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.