miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21326 3' -54.8 NC_004778.3 + 3824 0.66 0.929037
Target:  5'- cGCGGCG-CUUGUuuuuUACGAGGCUu -3'
miRNA:   3'- -CGUCGCaGAACAuaccGUGCUCCGGc -5'
21326 3' -54.8 NC_004778.3 + 35974 0.66 0.929037
Target:  5'- -aGGCG-CUUGU-UGGUGCGGcGCCGg -3'
miRNA:   3'- cgUCGCaGAACAuACCGUGCUcCGGC- -5'
21326 3' -54.8 NC_004778.3 + 101180 0.66 0.929037
Target:  5'- cGCAGCGacggUCUUGUccUGGCGCcguccGGGCUu -3'
miRNA:   3'- -CGUCGC----AGAACAu-ACCGUGc----UCCGGc -5'
21326 3' -54.8 NC_004778.3 + 117183 0.66 0.923592
Target:  5'- cGUcGCGUCggUGUucGUGGUcgugccggugGCGGGGUCGg -3'
miRNA:   3'- -CGuCGCAGa-ACA--UACCG----------UGCUCCGGC- -5'
21326 3' -54.8 NC_004778.3 + 36852 0.66 0.923592
Target:  5'- uGC-GCGUCUUGgcgaGCGCGGuguugcccacGGCCGg -3'
miRNA:   3'- -CGuCGCAGAACauacCGUGCU----------CCGGC- -5'
21326 3' -54.8 NC_004778.3 + 90545 0.66 0.905771
Target:  5'- uGCAGCGUCggauaGUGGCAgcgcuCGccGCCGa -3'
miRNA:   3'- -CGUCGCAGaaca-UACCGU-----GCucCGGC- -5'
21326 3' -54.8 NC_004778.3 + 82656 0.67 0.89267
Target:  5'- -aAGCGgaCUUGgcgcuUGGCGCGGGcGCCa -3'
miRNA:   3'- cgUCGCa-GAACau---ACCGUGCUC-CGGc -5'
21326 3' -54.8 NC_004778.3 + 104135 0.67 0.863662
Target:  5'- uGCAGCGUCUcuuUGggcGGCGCGAuGGaCa -3'
miRNA:   3'- -CGUCGCAGA---ACauaCCGUGCU-CCgGc -5'
21326 3' -54.8 NC_004778.3 + 69763 0.68 0.847837
Target:  5'- uGguGCcaCUgGUGUGGCGCGAgaaccgagaggcGGCCGu -3'
miRNA:   3'- -CguCGcaGAaCAUACCGUGCU------------CCGGC- -5'
21326 3' -54.8 NC_004778.3 + 49446 0.68 0.81381
Target:  5'- cGCAGCcUCUUGcgagGGCACGuuuauGGCgCGg -3'
miRNA:   3'- -CGUCGcAGAACaua-CCGUGCu----CCG-GC- -5'
21326 3' -54.8 NC_004778.3 + 57933 0.69 0.7675
Target:  5'- uGCAGCuGUCggaauacGUGUGGCGCuuGGCgCGg -3'
miRNA:   3'- -CGUCG-CAGaa-----CAUACCGUGcuCCG-GC- -5'
21326 3' -54.8 NC_004778.3 + 25753 0.7 0.757825
Target:  5'- aGCAGCGUCa-GUGUcGGCAgGccGGCCa -3'
miRNA:   3'- -CGUCGCAGaaCAUA-CCGUgCu-CCGGc -5'
21326 3' -54.8 NC_004778.3 + 32285 0.7 0.728147
Target:  5'- gGCGGCGcCgUGUcgGGCugGugcuuaaaguccAGGCCGc -3'
miRNA:   3'- -CGUCGCaGaACAuaCCGugC------------UCCGGC- -5'
21326 3' -54.8 NC_004778.3 + 53161 0.7 0.718068
Target:  5'- gGCGGCGg-UUGcUGUGGCggcgguugcgGCGGGGCCu -3'
miRNA:   3'- -CGUCGCagAAC-AUACCG----------UGCUCCGGc -5'
21326 3' -54.8 NC_004778.3 + 8762 0.71 0.687415
Target:  5'- aCGGCGUCaaagGUccGGUugGAGGCUa -3'
miRNA:   3'- cGUCGCAGaa--CAuaCCGugCUCCGGc -5'
21326 3' -54.8 NC_004778.3 + 74283 1.12 0.001974
Target:  5'- aGCAGCGUCUUGUAUGGCACGAGGCCGg -3'
miRNA:   3'- -CGUCGCAGAACAUACCGUGCUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.