miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21326 5' -52.5 NC_004778.3 + 57166 0.66 0.978221
Target:  5'- -aCGUGCUGuucgACCUgagcgugaccUGCGgcaacGCGUGCGa -3'
miRNA:   3'- gaGCGCGACua--UGGA----------AUGC-----UGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 21229 0.66 0.967058
Target:  5'- -cCGCGCUGAcGCCUguCGACaugaGCGa -3'
miRNA:   3'- gaGCGCGACUaUGGAauGCUGca--CGC- -5'
21326 5' -52.5 NC_004778.3 + 93824 0.67 0.960172
Target:  5'- gCUCGCGCUuc-AUUUUgGCGAUGUGCa -3'
miRNA:   3'- -GAGCGCGAcuaUGGAA-UGCUGCACGc -5'
21326 5' -52.5 NC_004778.3 + 58293 0.67 0.952353
Target:  5'- -gCGCGCUGG-GCUUUGCaGGCGUcgGCGc -3'
miRNA:   3'- gaGCGCGACUaUGGAAUG-CUGCA--CGC- -5'
21326 5' -52.5 NC_004778.3 + 114115 0.67 0.952353
Target:  5'- -aCGCGUgugugGAUGCUgUACGucauCGUGCGc -3'
miRNA:   3'- gaGCGCGa----CUAUGGaAUGCu---GCACGC- -5'
21326 5' -52.5 NC_004778.3 + 98840 0.67 0.948082
Target:  5'- uUCGCGUc---GCUgacgACGACGUGCGa -3'
miRNA:   3'- gAGCGCGacuaUGGaa--UGCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 109925 0.67 0.948082
Target:  5'- --gGCGUUGGaagUGCCcgACGAgGUGCGc -3'
miRNA:   3'- gagCGCGACU---AUGGaaUGCUgCACGC- -5'
21326 5' -52.5 NC_004778.3 + 77373 0.68 0.943564
Target:  5'- -gCGCGCUGGUGCaaUGCGcACGcGCc -3'
miRNA:   3'- gaGCGCGACUAUGgaAUGC-UGCaCGc -5'
21326 5' -52.5 NC_004778.3 + 59274 0.68 0.938798
Target:  5'- aUCGCGC----ACCgUGCGGCGaUGCGg -3'
miRNA:   3'- gAGCGCGacuaUGGaAUGCUGC-ACGC- -5'
21326 5' -52.5 NC_004778.3 + 20012 0.68 0.93378
Target:  5'- --aGCGagUGcUAUCUUugGACGUGCGu -3'
miRNA:   3'- gagCGCg-ACuAUGGAAugCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 66666 0.68 0.93378
Target:  5'- --aGCGagUGcUAUCUUugGACGUGCGu -3'
miRNA:   3'- gagCGCg-ACuAUGGAAugCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 66732 0.68 0.93378
Target:  5'- --aGCGagUGcUAUCUUugGACGUGCGu -3'
miRNA:   3'- gagCGCg-ACuAUGGAAugCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 25861 0.68 0.92851
Target:  5'- --aGCGCUGugcauUGCCUcgugcGCGACGgcgGCGg -3'
miRNA:   3'- gagCGCGACu----AUGGAa----UGCUGCa--CGC- -5'
21326 5' -52.5 NC_004778.3 + 48676 0.68 0.92851
Target:  5'- gUCGCggugcuGCUGGUGCCU-GCGGuuucuguuauCGUGCGu -3'
miRNA:   3'- gAGCG------CGACUAUGGAaUGCU----------GCACGC- -5'
21326 5' -52.5 NC_004778.3 + 27226 0.69 0.911186
Target:  5'- -cCGCGCUGA-ACUggaaUUGCGugGUGUu -3'
miRNA:   3'- gaGCGCGACUaUGG----AAUGCugCACGc -5'
21326 5' -52.5 NC_004778.3 + 92761 0.69 0.911186
Target:  5'- -aCGCGCUGGUACaaguuaGCcAUGUGCGa -3'
miRNA:   3'- gaGCGCGACUAUGgaa---UGcUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 90673 0.69 0.911186
Target:  5'- gUCGaCGCUGcGUACUUcuCGGCGUGCc -3'
miRNA:   3'- gAGC-GCGAC-UAUGGAauGCUGCACGc -5'
21326 5' -52.5 NC_004778.3 + 26889 0.69 0.911186
Target:  5'- -cCGCGCUGcagGCC--GCGGCGUuuGCGg -3'
miRNA:   3'- gaGCGCGACua-UGGaaUGCUGCA--CGC- -5'
21326 5' -52.5 NC_004778.3 + 32827 0.69 0.911186
Target:  5'- -aCGCGCaGcUGCCgcggcGCGugGUGCGu -3'
miRNA:   3'- gaGCGCGaCuAUGGaa---UGCugCACGC- -5'
21326 5' -52.5 NC_004778.3 + 33950 0.69 0.898384
Target:  5'- -cCGUGUaaUGGUuCUUUAUGACGUGCGc -3'
miRNA:   3'- gaGCGCG--ACUAuGGAAUGCUGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.