miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21326 5' -52.5 NC_004778.3 + 74317 1.08 0.006106
Target:  5'- gCUCGCGCUGAUACCUUACGACGUGCGc -3'
miRNA:   3'- -GAGCGCGACUAUGGAAUGCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 94696 0.76 0.568298
Target:  5'- uUCGCGCUGA-ACC--GCGAgCGUGCGc -3'
miRNA:   3'- gAGCGCGACUaUGGaaUGCU-GCACGC- -5'
21326 5' -52.5 NC_004778.3 + 25653 0.74 0.683591
Target:  5'- gCUUGCGCgGggGCCg-GCGGCGUGUGg -3'
miRNA:   3'- -GAGCGCGaCuaUGGaaUGCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 90801 0.72 0.783871
Target:  5'- -cCGCGCUGAcguug-ACGGCGUGCGc -3'
miRNA:   3'- gaGCGCGACUauggaaUGCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 68309 0.72 0.79327
Target:  5'- -aCGCGCUacGAUgcGCCgucgcCGACGUGCGa -3'
miRNA:   3'- gaGCGCGA--CUA--UGGaau--GCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 25962 0.71 0.802515
Target:  5'- -gCGCGCUGuacGCCUUaACGGCGUugaGCGu -3'
miRNA:   3'- gaGCGCGACua-UGGAA-UGCUGCA---CGC- -5'
21326 5' -52.5 NC_004778.3 + 97093 0.71 0.837775
Target:  5'- -aCGCGUUGAUGCaUUACGGCGUa-- -3'
miRNA:   3'- gaGCGCGACUAUGgAAUGCUGCAcgc -5'
21326 5' -52.5 NC_004778.3 + 14236 0.71 0.837775
Target:  5'- aUCGCGC-GGUACgCUaUugGugGUGCa -3'
miRNA:   3'- gAGCGCGaCUAUG-GA-AugCugCACGc -5'
21326 5' -52.5 NC_004778.3 + 19197 0.7 0.869879
Target:  5'- gUCGCGCgGGcACCUUgGUGACGUGCu -3'
miRNA:   3'- gAGCGCGaCUaUGGAA-UGCUGCACGc -5'
21326 5' -52.5 NC_004778.3 + 107677 0.69 0.884604
Target:  5'- gUCGCGCgacGAaACCUUGCG-CGUGg- -3'
miRNA:   3'- gAGCGCGa--CUaUGGAAUGCuGCACgc -5'
21326 5' -52.5 NC_004778.3 + 33950 0.69 0.898384
Target:  5'- -cCGUGUaaUGGUuCUUUAUGACGUGCGc -3'
miRNA:   3'- gaGCGCG--ACUAuGGAAUGCUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 56984 0.69 0.898384
Target:  5'- --gGCGCUGG-ACCUgUGCGGCGggccagGCGa -3'
miRNA:   3'- gagCGCGACUaUGGA-AUGCUGCa-----CGC- -5'
21326 5' -52.5 NC_004778.3 + 26889 0.69 0.911186
Target:  5'- -cCGCGCUGcagGCC--GCGGCGUuuGCGg -3'
miRNA:   3'- gaGCGCGACua-UGGaaUGCUGCA--CGC- -5'
21326 5' -52.5 NC_004778.3 + 32827 0.69 0.911186
Target:  5'- -aCGCGCaGcUGCCgcggcGCGugGUGCGu -3'
miRNA:   3'- gaGCGCGaCuAUGGaa---UGCugCACGC- -5'
21326 5' -52.5 NC_004778.3 + 27226 0.69 0.911186
Target:  5'- -cCGCGCUGA-ACUggaaUUGCGugGUGUu -3'
miRNA:   3'- gaGCGCGACUaUGG----AAUGCugCACGc -5'
21326 5' -52.5 NC_004778.3 + 90673 0.69 0.911186
Target:  5'- gUCGaCGCUGcGUACUUcuCGGCGUGCc -3'
miRNA:   3'- gAGC-GCGAC-UAUGGAauGCUGCACGc -5'
21326 5' -52.5 NC_004778.3 + 92761 0.69 0.911186
Target:  5'- -aCGCGCUGGUACaaguuaGCcAUGUGCGa -3'
miRNA:   3'- gaGCGCGACUAUGgaa---UGcUGCACGC- -5'
21326 5' -52.5 NC_004778.3 + 25861 0.68 0.92851
Target:  5'- --aGCGCUGugcauUGCCUcgugcGCGACGgcgGCGg -3'
miRNA:   3'- gagCGCGACu----AUGGAa----UGCUGCa--CGC- -5'
21326 5' -52.5 NC_004778.3 + 48676 0.68 0.92851
Target:  5'- gUCGCggugcuGCUGGUGCCU-GCGGuuucuguuauCGUGCGu -3'
miRNA:   3'- gAGCG------CGACUAUGGAaUGCU----------GCACGC- -5'
21326 5' -52.5 NC_004778.3 + 66732 0.68 0.93378
Target:  5'- --aGCGagUGcUAUCUUugGACGUGCGu -3'
miRNA:   3'- gagCGCg-ACuAUGGAAugCUGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.