miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21327 5' -48.4 NC_004778.3 + 77492 0.66 0.999037
Target:  5'- ---cAGCCGGuu-CGCGUCCCGc--- -3'
miRNA:   3'- cuauUCGGUUuuuGCGCAGGGCuagc -5'
21327 5' -48.4 NC_004778.3 + 111729 0.66 0.998997
Target:  5'- ----cGCCGuccgugacuuuGGCGCG-CCCGGUCGc -3'
miRNA:   3'- cuauuCGGUuu---------UUGCGCaGGGCUAGC- -5'
21327 5' -48.4 NC_004778.3 + 65319 0.66 0.998264
Target:  5'- ----cGCCAAAcGCgGUGUCCgGGUCa -3'
miRNA:   3'- cuauuCGGUUUuUG-CGCAGGgCUAGc -5'
21327 5' -48.4 NC_004778.3 + 30677 0.66 0.998264
Target:  5'- ---cGGCCuuuAACGCGcagaCCGAUCGu -3'
miRNA:   3'- cuauUCGGuuuUUGCGCag--GGCUAGC- -5'
21327 5' -48.4 NC_004778.3 + 37988 0.66 0.99791
Target:  5'- cGAUAAGCaccacGCGUGUCgCCGcgCGc -3'
miRNA:   3'- -CUAUUCGguuuuUGCGCAG-GGCuaGC- -5'
21327 5' -48.4 NC_004778.3 + 118045 0.68 0.992221
Target:  5'- cGGUGAuGCCAAAguccgacAACGCGUCCaugcacCGGUUGu -3'
miRNA:   3'- -CUAUU-CGGUUU-------UUGCGCAGG------GCUAGC- -5'
21327 5' -48.4 NC_004778.3 + 57061 0.69 0.986966
Target:  5'- ----cGCCAGcAGCGCGgacgacgcuccguugCCCGAUCa -3'
miRNA:   3'- cuauuCGGUUuUUGCGCa--------------GGGCUAGc -5'
21327 5' -48.4 NC_004778.3 + 84643 0.69 0.983073
Target:  5'- ---uAGCCcGGAGCGCGcgCUCGGUCa -3'
miRNA:   3'- cuauUCGGuUUUUGCGCa-GGGCUAGc -5'
21327 5' -48.4 NC_004778.3 + 72389 0.69 0.983073
Target:  5'- aGUGGGCCGcGAACGCGUCgCCa---- -3'
miRNA:   3'- cUAUUCGGUuUUUGCGCAG-GGcuagc -5'
21327 5' -48.4 NC_004778.3 + 91051 0.74 0.888312
Target:  5'- --gAAGCCAucAACGCG-CCCGcGUCGu -3'
miRNA:   3'- cuaUUCGGUuuUUGCGCaGGGC-UAGC- -5'
21327 5' -48.4 NC_004778.3 + 7354 0.76 0.804244
Target:  5'- --aAGGuCCGAAuGCGCGUgCCGGUCGa -3'
miRNA:   3'- cuaUUC-GGUUUuUGCGCAgGGCUAGC- -5'
21327 5' -48.4 NC_004778.3 + 2428 0.8 0.594554
Target:  5'- ----uGCCAAGAGCGCGUCgCGGUCc -3'
miRNA:   3'- cuauuCGGUUUUUGCGCAGgGCUAGc -5'
21327 5' -48.4 NC_004778.3 + 75185 1.09 0.013459
Target:  5'- aGAUAAGCCAAAAACGCGUCCCGAUCGc -3'
miRNA:   3'- -CUAUUCGGUUUUUGCGCAGGGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.