miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21328 3' -54.4 NC_004778.3 + 124350 0.66 0.931933
Target:  5'- gAGCCGGUGAcuu-UGCGGUUUGUu- -3'
miRNA:   3'- gUCGGCCACUuucuGUGCCGAACGcu -5'
21328 3' -54.4 NC_004778.3 + 71215 0.66 0.931933
Target:  5'- aGGCCGcuGUGcagcggcuGGACGCGGCcucGCGAa -3'
miRNA:   3'- gUCGGC--CACuu------UCUGUGCCGaa-CGCU- -5'
21328 3' -54.4 NC_004778.3 + 32619 0.66 0.926589
Target:  5'- -cGCUGGUGcAAAGGCgacacgcaGCGGCU-GCGc -3'
miRNA:   3'- guCGGCCAC-UUUCUG--------UGCCGAaCGCu -5'
21328 3' -54.4 NC_004778.3 + 45765 0.66 0.926589
Target:  5'- -cGCCGcGacGAGGGCGCGGCUaUGCa- -3'
miRNA:   3'- guCGGC-CacUUUCUGUGCCGA-ACGcu -5'
21328 3' -54.4 NC_004778.3 + 49309 0.67 0.900101
Target:  5'- gCGGCgCGGUcauuGGACGCGGCgccgcacaacgugUGCGGc -3'
miRNA:   3'- -GUCG-GCCAcuu-UCUGUGCCGa------------ACGCU- -5'
21328 3' -54.4 NC_004778.3 + 13773 0.67 0.889286
Target:  5'- gCAGCUGGUGcuGcACGCGGCgcucuacGCGGu -3'
miRNA:   3'- -GUCGGCCACuuUcUGUGCCGaa-----CGCU- -5'
21328 3' -54.4 NC_004778.3 + 108243 0.68 0.835099
Target:  5'- -cGCCGuGUGcuuGACACGGUaccUGCGAu -3'
miRNA:   3'- guCGGC-CACuuuCUGUGCCGa--ACGCU- -5'
21328 3' -54.4 NC_004778.3 + 89886 0.68 0.835099
Target:  5'- gCAGCgUGGUGGgcGcaaGCGGCUUGCGc -3'
miRNA:   3'- -GUCG-GCCACUuuCug-UGCCGAACGCu -5'
21328 3' -54.4 NC_004778.3 + 124312 0.69 0.790453
Target:  5'- -cGCCGGcGu-GGGCACGGCgucuuccgGCGAg -3'
miRNA:   3'- guCGGCCaCuuUCUGUGCCGaa------CGCU- -5'
21328 3' -54.4 NC_004778.3 + 98919 0.72 0.607481
Target:  5'- -cGCUGGgGAuGGugGCGGCUUGCa- -3'
miRNA:   3'- guCGGCCaCUuUCugUGCCGAACGcu -5'
21328 3' -54.4 NC_004778.3 + 112222 0.73 0.59702
Target:  5'- gCGGCCgcgcgguccaGGUGAuAGcACGCGGgUUGCGAg -3'
miRNA:   3'- -GUCGG----------CCACUuUC-UGUGCCgAACGCU- -5'
21328 3' -54.4 NC_004778.3 + 77093 1.09 0.003384
Target:  5'- cCAGCCGGUGAAAGACACGGCUUGCGAu -3'
miRNA:   3'- -GUCGGCCACUUUCUGUGCCGAACGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.