miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21328 5' -55.8 NC_004778.3 + 61294 0.65 0.899468
Target:  5'- cGGCCGacaucugguuugcuGgcGCAuccauCUCGCCGGCCa- -3'
miRNA:   3'- -CCGGU--------------CauUGUcau--GAGCGGCCGGac -5'
21328 5' -55.8 NC_004778.3 + 27666 0.66 0.894854
Target:  5'- cGGCCAGcccGgGGUAUUCGUcgaacaCGGCCa- -3'
miRNA:   3'- -CCGGUCau-UgUCAUGAGCG------GCCGGac -5'
21328 5' -55.8 NC_004778.3 + 62074 0.66 0.894854
Target:  5'- cGGCCGccAACGccauuaAUUCGCCGGCCg- -3'
miRNA:   3'- -CCGGUcaUUGUca----UGAGCGGCCGGac -5'
21328 5' -55.8 NC_004778.3 + 64647 0.66 0.890807
Target:  5'- cGGCCGgccuucgcacaacucGUuuacuCGGcAUUCGCCGGCCUc -3'
miRNA:   3'- -CCGGU---------------CAuu---GUCaUGAGCGGCCGGAc -5'
21328 5' -55.8 NC_004778.3 + 121702 0.66 0.888062
Target:  5'- cGGCCGGcGugGGcguguUGCUgGCCGGCg-- -3'
miRNA:   3'- -CCGGUCaUugUC-----AUGAgCGGCCGgac -5'
21328 5' -55.8 NC_004778.3 + 49134 0.66 0.866315
Target:  5'- gGGCCAGUucGugAuGUACgugCGCUGGCa-- -3'
miRNA:   3'- -CCGGUCA--UugU-CAUGa--GCGGCCGgac -5'
21328 5' -55.8 NC_004778.3 + 28830 0.67 0.850728
Target:  5'- uGGCCGGacGGCAGUcGCUuucgaUGUCGGCCg- -3'
miRNA:   3'- -CCGGUCa-UUGUCA-UGA-----GCGGCCGGac -5'
21328 5' -55.8 NC_004778.3 + 28446 0.67 0.82584
Target:  5'- uGGuCCAGcugcugcgaUAGCGGUcGCUCGCCGucGCCUu -3'
miRNA:   3'- -CC-GGUC---------AUUGUCA-UGAGCGGC--CGGAc -5'
21328 5' -55.8 NC_004778.3 + 51342 0.68 0.808331
Target:  5'- aGGCCAGUAACGgggucuGUACgagUGuuGGUCa- -3'
miRNA:   3'- -CCGGUCAUUGU------CAUGa--GCggCCGGac -5'
21328 5' -55.8 NC_004778.3 + 90553 0.68 0.790167
Target:  5'- cGGaUAGUGGCAGcGCUCGCC-GCCg- -3'
miRNA:   3'- -CCgGUCAUUGUCaUGAGCGGcCGGac -5'
21328 5' -55.8 NC_004778.3 + 40185 0.68 0.778983
Target:  5'- cGGCCcacgaauuuGCAGUGCUCGCUcGCCg- -3'
miRNA:   3'- -CCGGucau-----UGUCAUGAGCGGcCGGac -5'
21328 5' -55.8 NC_004778.3 + 121548 0.68 0.761849
Target:  5'- cGGCCAGcAACAc-GCccaCGCCGGCCg- -3'
miRNA:   3'- -CCGGUCaUUGUcaUGa--GCGGCCGGac -5'
21328 5' -55.8 NC_004778.3 + 39776 0.69 0.752161
Target:  5'- cGCUGG-AACGGUGCcCGCCGGaCUGu -3'
miRNA:   3'- cCGGUCaUUGUCAUGaGCGGCCgGAC- -5'
21328 5' -55.8 NC_004778.3 + 21496 0.69 0.742364
Target:  5'- gGGCCGGaUGGCGccGCcacCGCCGGCCg- -3'
miRNA:   3'- -CCGGUC-AUUGUcaUGa--GCGGCCGGac -5'
21328 5' -55.8 NC_004778.3 + 4051 0.69 0.742364
Target:  5'- cGCCGGcgGGCAGgcCgagCGCCuGCCUGa -3'
miRNA:   3'- cCGGUCa-UUGUCauGa--GCGGcCGGAC- -5'
21328 5' -55.8 NC_004778.3 + 81754 0.7 0.702285
Target:  5'- cGGCgGGUGGCGGaccgACUgCGCCgguaggugcgcGGCCUGc -3'
miRNA:   3'- -CCGgUCAUUGUCa---UGA-GCGG-----------CCGGAC- -5'
21328 5' -55.8 NC_004778.3 + 25579 0.7 0.702285
Target:  5'- uGCUAaUAAuCAGUauGCUgGCCGGCCUGc -3'
miRNA:   3'- cCGGUcAUU-GUCA--UGAgCGGCCGGAC- -5'
21328 5' -55.8 NC_004778.3 + 33763 0.71 0.5991
Target:  5'- aGGUCgAGUGGCAGguugugUUUGCCGGCCUc -3'
miRNA:   3'- -CCGG-UCAUUGUCau----GAGCGGCCGGAc -5'
21328 5' -55.8 NC_004778.3 + 97912 0.71 0.5991
Target:  5'- cGGCCcuGUGGCAcuuaUCGCCGGCCa- -3'
miRNA:   3'- -CCGGu-CAUUGUcaugAGCGGCCGGac -5'
21328 5' -55.8 NC_004778.3 + 115086 0.72 0.558066
Target:  5'- aGGCC----GCGGUGCgcaCGCCGGCUUGc -3'
miRNA:   3'- -CCGGucauUGUCAUGa--GCGGCCGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.