miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21329 3' -54.9 NC_004778.3 + 33161 0.66 0.923288
Target:  5'- uGCUGgaacGCGGcGAUGCGCacGCGGAa -3'
miRNA:   3'- -CGACaacaUGCC-CUGCGUGcaCGCCU- -5'
21329 3' -54.9 NC_004778.3 + 10923 0.66 0.921055
Target:  5'- uGCUGUUGcucgauggcguuUACGGcGGCGCGCacacggcagcccGCGGAg -3'
miRNA:   3'- -CGACAAC------------AUGCC-CUGCGUGca----------CGCCU- -5'
21329 3' -54.9 NC_004778.3 + 118418 0.66 0.91173
Target:  5'- aCUGUuuggGUGCGGGuuGCACG-GCGc- -3'
miRNA:   3'- cGACAa---CAUGCCCugCGUGCaCGCcu -5'
21329 3' -54.9 NC_004778.3 + 24852 0.67 0.905588
Target:  5'- uGCUucGUgccGUGCGGGcAUGUgguaGCGUGCGGc -3'
miRNA:   3'- -CGA--CAa--CAUGCCC-UGCG----UGCACGCCu -5'
21329 3' -54.9 NC_004778.3 + 46711 0.67 0.885041
Target:  5'- aGCgUGgaggUGUACGGcgugcacGACGCACGUuuGGAc -3'
miRNA:   3'- -CG-ACa---ACAUGCC-------CUGCGUGCAcgCCU- -5'
21329 3' -54.9 NC_004778.3 + 121382 0.67 0.871355
Target:  5'- -gUGUucaUGUugGGGucacgcugGCACGUGCGGc -3'
miRNA:   3'- cgACA---ACAugCCCug------CGUGCACGCCu -5'
21329 3' -54.9 NC_004778.3 + 36190 0.68 0.863832
Target:  5'- gGCUGUacacGUACGGcACGCcCaUGCGGAu -3'
miRNA:   3'- -CGACAa---CAUGCCcUGCGuGcACGCCU- -5'
21329 3' -54.9 NC_004778.3 + 39487 0.68 0.856097
Target:  5'- --gGUUGUACaagcgaauGGGuaGCGUgACGUGCGGAa -3'
miRNA:   3'- cgaCAACAUG--------CCC--UGCG-UGCACGCCU- -5'
21329 3' -54.9 NC_004778.3 + 17592 0.69 0.814459
Target:  5'- cGCaGUUGaaacgGCGGGGCcgcaGCACGaUGCGGu -3'
miRNA:   3'- -CGaCAACa----UGCCCUG----CGUGC-ACGCCu -5'
21329 3' -54.9 NC_004778.3 + 38917 0.7 0.74934
Target:  5'- -aUGUUaaUAUGGGAuagcgcUGCGCGUGCGGAu -3'
miRNA:   3'- cgACAAc-AUGCCCU------GCGUGCACGCCU- -5'
21329 3' -54.9 NC_004778.3 + 128192 0.72 0.658509
Target:  5'- aCUGUUGUguuACGGGcUGCGUGUGCGGc -3'
miRNA:   3'- cGACAACA---UGCCCuGCGUGCACGCCu -5'
21329 3' -54.9 NC_004778.3 + 47572 0.75 0.448704
Target:  5'- gGCUGaUGUugGGGugGCGCGUGg--- -3'
miRNA:   3'- -CGACaACAugCCCugCGUGCACgccu -5'
21329 3' -54.9 NC_004778.3 + 77692 1.11 0.00241
Target:  5'- cGCUGUUGUACGGGACGCACGUGCGGAu -3'
miRNA:   3'- -CGACAACAUGCCCUGCGUGCACGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.