miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21329 5' -61.3 NC_004778.3 + 49464 0.66 0.653201
Target:  5'- cGGCGcCGCguccaaugaCCGCGcCGCGCUGuucGGCGACa -3'
miRNA:   3'- -UCGU-GUG---------GGCGC-GCGUGGC---UCGCUGa -5'
21329 5' -61.3 NC_004778.3 + 17253 0.66 0.653201
Target:  5'- aGGCGCG-CCGCGCGCAC--AGCaACa -3'
miRNA:   3'- -UCGUGUgGGCGCGCGUGgcUCGcUGa -5'
21329 5' -61.3 NC_004778.3 + 97970 0.66 0.653201
Target:  5'- gAGCuuGaaCGaGCGCGCCGGGCGAUc -3'
miRNA:   3'- -UCGugUggGCgCGCGUGGCUCGCUGa -5'
21329 5' -61.3 NC_004778.3 + 73508 0.66 0.653201
Target:  5'- uGCACGCUCGUguacacGCGCAauUCG-GCGGCg -3'
miRNA:   3'- uCGUGUGGGCG------CGCGU--GGCuCGCUGa -5'
21329 5' -61.3 NC_004778.3 + 116187 0.66 0.647201
Target:  5'- cGCACGCCggaccaaucgaCGUGCGCAucuucaaacacaaacCCG-GCGGCg -3'
miRNA:   3'- uCGUGUGG-----------GCGCGCGU---------------GGCuCGCUGa -5'
21329 5' -61.3 NC_004778.3 + 47975 0.66 0.643198
Target:  5'- aAGCACGCgccaguaCGCGCGCACgCGcGCaACa -3'
miRNA:   3'- -UCGUGUGg------GCGCGCGUG-GCuCGcUGa -5'
21329 5' -61.3 NC_004778.3 + 98514 0.66 0.643198
Target:  5'- uGCuGCGCCCGgGCGCGgUGcGCGuCUg -3'
miRNA:   3'- uCG-UGUGGGCgCGCGUgGCuCGCuGA- -5'
21329 5' -61.3 NC_004778.3 + 95243 0.66 0.643198
Target:  5'- cGCGgACUCGgGCaugguGCGCCGcGGCGACc -3'
miRNA:   3'- uCGUgUGGGCgCG-----CGUGGC-UCGCUGa -5'
21329 5' -61.3 NC_004778.3 + 36696 0.66 0.643198
Target:  5'- gGGCaACACCgCGCucgccaagacGCGCACCGccGGCGcCa -3'
miRNA:   3'- -UCG-UGUGG-GCG----------CGCGUGGC--UCGCuGa -5'
21329 5' -61.3 NC_004778.3 + 89248 0.66 0.643198
Target:  5'- uGUACACCa----GCACCGAGCGAa- -3'
miRNA:   3'- uCGUGUGGgcgcgCGUGGCUCGCUga -5'
21329 5' -61.3 NC_004778.3 + 4557 0.66 0.643198
Target:  5'- --gGCGCCCaGCGCGCuguGCCGcguuAGCaGACUg -3'
miRNA:   3'- ucgUGUGGG-CGCGCG---UGGC----UCG-CUGA- -5'
21329 5' -61.3 NC_004778.3 + 121606 0.66 0.633188
Target:  5'- cGGCAguUACUaugUGCGCgGCGCCGAcgGCGGCg -3'
miRNA:   3'- -UCGU--GUGG---GCGCG-CGUGGCU--CGCUGa -5'
21329 5' -61.3 NC_004778.3 + 82818 0.66 0.62718
Target:  5'- cGGCuugGCGCCCGCGCcaaGCGCCaaguccgcuuuggucGAcauGCGACg -3'
miRNA:   3'- -UCG---UGUGGGCGCG---CGUGG---------------CU---CGCUGa -5'
21329 5' -61.3 NC_004778.3 + 13442 0.66 0.623176
Target:  5'- gGGCACcuGCCCGUGUuggauGCGCUG-GCGAg- -3'
miRNA:   3'- -UCGUG--UGGGCGCG-----CGUGGCuCGCUga -5'
21329 5' -61.3 NC_004778.3 + 39166 0.66 0.623176
Target:  5'- uGCuuguCGCCCGUGuCGUACCuuucGCGACa -3'
miRNA:   3'- uCGu---GUGGGCGC-GCGUGGcu--CGCUGa -5'
21329 5' -61.3 NC_004778.3 + 124448 0.66 0.617172
Target:  5'- cGCcgGCGCCgCGCuucagcauucuugaaGCGCGCCGAGCuGCc -3'
miRNA:   3'- uCG--UGUGG-GCG---------------CGCGUGGCUCGcUGa -5'
21329 5' -61.3 NC_004778.3 + 15065 0.66 0.613171
Target:  5'- aGGCGCGCuCCGCcaCGUgACCGAGCaACg -3'
miRNA:   3'- -UCGUGUG-GGCGc-GCG-UGGCUCGcUGa -5'
21329 5' -61.3 NC_004778.3 + 118932 0.66 0.613171
Target:  5'- uGCGCGCcggCCGCGcCGCGCCcGAagcGUGGCa -3'
miRNA:   3'- uCGUGUG---GGCGC-GCGUGG-CU---CGCUGa -5'
21329 5' -61.3 NC_004778.3 + 31869 0.66 0.613171
Target:  5'- aAGCGCGCCgCGCagcaaaacCGCAUCGucgaguGCGACa -3'
miRNA:   3'- -UCGUGUGG-GCGc-------GCGUGGCu-----CGCUGa -5'
21329 5' -61.3 NC_004778.3 + 32277 0.66 0.60318
Target:  5'- cGCugGCCgGCG-GCGCCGuGUcgGGCUg -3'
miRNA:   3'- uCGugUGGgCGCgCGUGGCuCG--CUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.