miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21330 5' -53 NC_004778.3 + 31373 0.66 0.969228
Target:  5'- cGAg-GCuGcCAAAGUGCuGGCGCC-GCa -3'
miRNA:   3'- aCUagCG-CaGUUUCAUG-CCGCGGuCG- -5'
21330 5' -53 NC_004778.3 + 49370 0.66 0.969228
Target:  5'- -uGUCaaaGUCGAGGUAguUGGgGCCGGCc -3'
miRNA:   3'- acUAGcg-CAGUUUCAU--GCCgCGGUCG- -5'
21330 5' -53 NC_004778.3 + 112531 0.66 0.969228
Target:  5'- cGGcUCGCGUUcguAAGGUcgACGGCaGUgAGCa -3'
miRNA:   3'- aCU-AGCGCAG---UUUCA--UGCCG-CGgUCG- -5'
21330 5' -53 NC_004778.3 + 17340 0.66 0.969228
Target:  5'- aGAUUuugGCGUCcgugcAGUcGCGGUGCCcGCg -3'
miRNA:   3'- aCUAG---CGCAGuu---UCA-UGCCGCGGuCG- -5'
21330 5' -53 NC_004778.3 + 95171 0.66 0.96892
Target:  5'- cGAcgGCGUCGAAGUgaGCGGUuguaacuGcCCGGCu -3'
miRNA:   3'- aCUagCGCAGUUUCA--UGCCG-------C-GGUCG- -5'
21330 5' -53 NC_004778.3 + 21171 0.66 0.966049
Target:  5'- uUGGUgCGUaggGUUAAAGUGCu-CGCCGGCg -3'
miRNA:   3'- -ACUA-GCG---CAGUUUCAUGccGCGGUCG- -5'
21330 5' -53 NC_004778.3 + 70194 0.66 0.966049
Target:  5'- uUGcgCGCGagCAGAaaauuaucUACGGCGCCcaAGCg -3'
miRNA:   3'- -ACuaGCGCa-GUUUc-------AUGCCGCGG--UCG- -5'
21330 5' -53 NC_004778.3 + 49484 0.66 0.966049
Target:  5'- gUGGUgcCGCacaCGuuGUGCGGCGCC-GCg -3'
miRNA:   3'- -ACUA--GCGca-GUuuCAUGCCGCGGuCG- -5'
21330 5' -53 NC_004778.3 + 121434 0.66 0.962645
Target:  5'- cGGcCGUGUCGccGccguCGGCGCCGcGCa -3'
miRNA:   3'- aCUaGCGCAGUuuCau--GCCGCGGU-CG- -5'
21330 5' -53 NC_004778.3 + 113160 0.66 0.962645
Target:  5'- --cUCGuCGUUAuGGacgcaaACGGCGCCAGUu -3'
miRNA:   3'- acuAGC-GCAGUuUCa-----UGCCGCGGUCG- -5'
21330 5' -53 NC_004778.3 + 972 0.66 0.95901
Target:  5'- -cGUCgGCGUCGAu---CGGCGCagCAGCg -3'
miRNA:   3'- acUAG-CGCAGUUucauGCCGCG--GUCG- -5'
21330 5' -53 NC_004778.3 + 48135 0.66 0.95901
Target:  5'- uUGcgCGCGUgCGcgcGUACuGGCGCguGCu -3'
miRNA:   3'- -ACuaGCGCA-GUuu-CAUG-CCGCGguCG- -5'
21330 5' -53 NC_004778.3 + 39589 0.66 0.95901
Target:  5'- --cUCGCaauaGUCGGcaaaGCGGCGCCGGUg -3'
miRNA:   3'- acuAGCG----CAGUUuca-UGCCGCGGUCG- -5'
21330 5' -53 NC_004778.3 + 1734 0.66 0.95901
Target:  5'- ---cCGCGcUCAAAcacgguGUACGGCGuaagcuCCAGCa -3'
miRNA:   3'- acuaGCGC-AGUUU------CAUGCCGC------GGUCG- -5'
21330 5' -53 NC_004778.3 + 24281 0.66 0.958634
Target:  5'- cGAccUCGCGUUucGAGUACGgGCGUUcucguaaAGCg -3'
miRNA:   3'- aCU--AGCGCAGu-UUCAUGC-CGCGG-------UCG- -5'
21330 5' -53 NC_004778.3 + 24480 0.66 0.958634
Target:  5'- cGAccUCGCGUUucGAGUACGgGCGUUcucguaaAGCg -3'
miRNA:   3'- aCU--AGCGCAGu-UUCAUGC-CGCGG-------UCG- -5'
21330 5' -53 NC_004778.3 + 24083 0.66 0.958634
Target:  5'- cGAccUCGCGUUucGAGUACGgGCGUUcucguaaAGCg -3'
miRNA:   3'- aCU--AGCGCAGu-UUCAUGC-CGCGG-------UCG- -5'
21330 5' -53 NC_004778.3 + 127561 0.66 0.95514
Target:  5'- aGGUUGCGUCcaug-AUGGaaCGCCAGUa -3'
miRNA:   3'- aCUAGCGCAGuuucaUGCC--GCGGUCG- -5'
21330 5' -53 NC_004778.3 + 119531 0.66 0.95514
Target:  5'- ---aCGCGUCAucAAGcccaaAauGCGCCAGCg -3'
miRNA:   3'- acuaGCGCAGU--UUCa----UgcCGCGGUCG- -5'
21330 5' -53 NC_004778.3 + 30937 0.66 0.95514
Target:  5'- aUGAUgGCGUC-AAGUACGGCa----- -3'
miRNA:   3'- -ACUAgCGCAGuUUCAUGCCGcggucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.