miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21331 3' -53.2 NC_004778.3 + 95121 0.66 0.972826
Target:  5'- -cCGAUUAgCGgACGACgCACGucGGGCCg -3'
miRNA:   3'- guGCUGAUgGCaUGCUG-GUGU--CCUGG- -5'
21331 3' -53.2 NC_004778.3 + 45137 0.66 0.972826
Target:  5'- aGCGACccgGCCGcGCGAaaugCGCuGGAUCg -3'
miRNA:   3'- gUGCUGa--UGGCaUGCUg---GUGuCCUGG- -5'
21331 3' -53.2 NC_004778.3 + 36039 0.66 0.972826
Target:  5'- --gGGCgUGCCGUACGugUACA--GCCa -3'
miRNA:   3'- gugCUG-AUGGCAUGCugGUGUccUGG- -5'
21331 3' -53.2 NC_004778.3 + 97198 0.66 0.969958
Target:  5'- aGCuGAUugUACUGUugGGCCACAcgcuGGGCa -3'
miRNA:   3'- gUG-CUG--AUGGCAugCUGGUGU----CCUGg -5'
21331 3' -53.2 NC_004778.3 + 95242 0.66 0.96688
Target:  5'- cCGCgGACUcgggcAUgGUGCG-CCGCGGcGACCg -3'
miRNA:   3'- -GUG-CUGA-----UGgCAUGCuGGUGUC-CUGG- -5'
21331 3' -53.2 NC_004778.3 + 68624 0.66 0.96688
Target:  5'- aACGACggcaacGCCGgcgGCGGCgGCGGcGGCg -3'
miRNA:   3'- gUGCUGa-----UGGCa--UGCUGgUGUC-CUGg -5'
21331 3' -53.2 NC_004778.3 + 53161 0.66 0.96688
Target:  5'- gGCGGCgguUGCUGUggcgGCGguuGCgGCGGGGCCu -3'
miRNA:   3'- gUGCUG---AUGGCA----UGC---UGgUGUCCUGG- -5'
21331 3' -53.2 NC_004778.3 + 36825 0.66 0.96688
Target:  5'- cCACGGCcgGCCuaaACGACUGCGuGGACg -3'
miRNA:   3'- -GUGCUGa-UGGca-UGCUGGUGU-CCUGg -5'
21331 3' -53.2 NC_004778.3 + 14536 0.66 0.963586
Target:  5'- uCACGuCgUGCCGgACGACCGCGcGuCCa -3'
miRNA:   3'- -GUGCuG-AUGGCaUGCUGGUGUcCuGG- -5'
21331 3' -53.2 NC_004778.3 + 56961 0.66 0.963586
Target:  5'- aACGugUGCCGcgGCGugaaCACGgcgcuGGACCu -3'
miRNA:   3'- gUGCugAUGGCa-UGCug--GUGU-----CCUGG- -5'
21331 3' -53.2 NC_004778.3 + 101279 0.66 0.963586
Target:  5'- gACGGCUACCGguuCGcUCACGGaGcaGCCg -3'
miRNA:   3'- gUGCUGAUGGCau-GCuGGUGUC-C--UGG- -5'
21331 3' -53.2 NC_004778.3 + 63918 0.66 0.960069
Target:  5'- gACGACcuuuuCCaaGCGACUGCGGGugCu -3'
miRNA:   3'- gUGCUGau---GGcaUGCUGGUGUCCugG- -5'
21331 3' -53.2 NC_004778.3 + 32960 0.66 0.960069
Target:  5'- cCGCGug-GCUGUGCGGCCGCGucGACg -3'
miRNA:   3'- -GUGCugaUGGCAUGCUGGUGUc-CUGg -5'
21331 3' -53.2 NC_004778.3 + 99176 0.66 0.960069
Target:  5'- cCGCGACgcguUGCCGgGCGuuGCgGCAcccGGACCg -3'
miRNA:   3'- -GUGCUG----AUGGCaUGC--UGgUGU---CCUGG- -5'
21331 3' -53.2 NC_004778.3 + 69886 0.67 0.956325
Target:  5'- aCACGugUACUugcaaaGCGGCC-CAgcGGACCg -3'
miRNA:   3'- -GUGCugAUGGca----UGCUGGuGU--CCUGG- -5'
21331 3' -53.2 NC_004778.3 + 80571 0.67 0.956325
Target:  5'- uGCGGCUggcGCCGUacuuugacGCGAUCAUcagcgAGGGCUc -3'
miRNA:   3'- gUGCUGA---UGGCA--------UGCUGGUG-----UCCUGG- -5'
21331 3' -53.2 NC_004778.3 + 95004 0.67 0.956325
Target:  5'- cCGCGcGC-GCCGUGCG-CCgacggGCAGGugCg -3'
miRNA:   3'- -GUGC-UGaUGGCAUGCuGG-----UGUCCugG- -5'
21331 3' -53.2 NC_004778.3 + 82701 0.67 0.956325
Target:  5'- uUugGACggUCGUcGCGGgCACAGGugCg -3'
miRNA:   3'- -GugCUGauGGCA-UGCUgGUGUCCugG- -5'
21331 3' -53.2 NC_004778.3 + 38131 0.67 0.953967
Target:  5'- gCAUGACUGCUGacgcgccgcuacggcUGCGAUuuugCAUAGGACa -3'
miRNA:   3'- -GUGCUGAUGGC---------------AUGCUG----GUGUCCUGg -5'
21331 3' -53.2 NC_004778.3 + 2598 0.67 0.952349
Target:  5'- aGCGGCgUGCCGcACucgGGCCACAGGuaaCg -3'
miRNA:   3'- gUGCUG-AUGGCaUG---CUGGUGUCCug-G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.