miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21331 3' -53.2 NC_004778.3 + 2598 0.67 0.952349
Target:  5'- aGCGGCgUGCCGcACucgGGCCACAGGuaaCg -3'
miRNA:   3'- gUGCUG-AUGGCaUG---CUGGUGUCCug-G- -5'
21331 3' -53.2 NC_004778.3 + 43414 0.67 0.948136
Target:  5'- uGCGA--GCCGgcggacaGCGACgACAGcGACCa -3'
miRNA:   3'- gUGCUgaUGGCa------UGCUGgUGUC-CUGG- -5'
21331 3' -53.2 NC_004778.3 + 81973 0.67 0.948136
Target:  5'- gGCGGCUAUag-ACGccGCCGCAGGAg- -3'
miRNA:   3'- gUGCUGAUGgcaUGC--UGGUGUCCUgg -5'
21331 3' -53.2 NC_004778.3 + 29357 0.67 0.948136
Target:  5'- uGCGACUGCC--GCGugCGCGauuGGcuGCCg -3'
miRNA:   3'- gUGCUGAUGGcaUGCugGUGU---CC--UGG- -5'
21331 3' -53.2 NC_004778.3 + 4745 0.67 0.948136
Target:  5'- aACGACgaggACCGUugGA-CAguGG-CCa -3'
miRNA:   3'- gUGCUGa---UGGCAugCUgGUguCCuGG- -5'
21331 3' -53.2 NC_004778.3 + 48861 0.67 0.947702
Target:  5'- cCGCGGCUACUacaacACGcacgauaacagaaACCGCAGGcACCa -3'
miRNA:   3'- -GUGCUGAUGGca---UGC-------------UGGUGUCC-UGG- -5'
21331 3' -53.2 NC_004778.3 + 20234 0.67 0.943685
Target:  5'- uGCGcCUGCCGgcagUugGACCACGuuACCg -3'
miRNA:   3'- gUGCuGAUGGC----AugCUGGUGUccUGG- -5'
21331 3' -53.2 NC_004778.3 + 28280 0.67 0.941836
Target:  5'- gGCGACgg-CGaGCGACCGCuaucgcagcagcuGGACCa -3'
miRNA:   3'- gUGCUGaugGCaUGCUGGUGu------------CCUGG- -5'
21331 3' -53.2 NC_004778.3 + 99186 0.67 0.938991
Target:  5'- uUACuACUACUGUACGAa-GCGGG-CCa -3'
miRNA:   3'- -GUGcUGAUGGCAUGCUggUGUCCuGG- -5'
21331 3' -53.2 NC_004778.3 + 100985 0.67 0.938991
Target:  5'- gGCGACUuugaaauCUGaACGACCcuuGCAGGAgCg -3'
miRNA:   3'- gUGCUGAu------GGCaUGCUGG---UGUCCUgG- -5'
21331 3' -53.2 NC_004778.3 + 66881 0.67 0.938508
Target:  5'- -uCGGC-GCCGUuuuuuuuucgaguACGGCguCAGGGCCg -3'
miRNA:   3'- guGCUGaUGGCA-------------UGCUGguGUCCUGG- -5'
21331 3' -53.2 NC_004778.3 + 32426 0.68 0.933545
Target:  5'- aCACGGCgccGCCGgccaGCGugCgcgguugGCAGGACg -3'
miRNA:   3'- -GUGCUGa--UGGCa---UGCugG-------UGUCCUGg -5'
21331 3' -53.2 NC_004778.3 + 8116 0.68 0.928869
Target:  5'- aGCGACgUGCaCGUGCuACCAUuGGACg -3'
miRNA:   3'- gUGCUG-AUG-GCAUGcUGGUGuCCUGg -5'
21331 3' -53.2 NC_004778.3 + 100475 0.68 0.923439
Target:  5'- gGCG-UUGCCauGUACGGCCGCGguuGGACa -3'
miRNA:   3'- gUGCuGAUGG--CAUGCUGGUGU---CCUGg -5'
21331 3' -53.2 NC_004778.3 + 114552 0.68 0.923439
Target:  5'- cCGCGGCUGCUGacaagcCGGCCguugcuacGCAaGGGCCg -3'
miRNA:   3'- -GUGCUGAUGGCau----GCUGG--------UGU-CCUGG- -5'
21331 3' -53.2 NC_004778.3 + 102222 0.68 0.917764
Target:  5'- aCACGGCguucgagGCCGUcaugaacauggGCGGCaUACAGG-CCg -3'
miRNA:   3'- -GUGCUGa------UGGCA-----------UGCUG-GUGUCCuGG- -5'
21331 3' -53.2 NC_004778.3 + 121591 0.68 0.917764
Target:  5'- gCGCGGC-GCCGacgGCGGCgACAcGGCCg -3'
miRNA:   3'- -GUGCUGaUGGCa--UGCUGgUGUcCUGG- -5'
21331 3' -53.2 NC_004778.3 + 27480 0.69 0.899273
Target:  5'- gGCaACgUGCCGUGggcCGACCACAuGGCCg -3'
miRNA:   3'- gUGcUG-AUGGCAU---GCUGGUGUcCUGG- -5'
21331 3' -53.2 NC_004778.3 + 70774 0.69 0.899273
Target:  5'- cCACGGCUACCGUGguguaaugcguCGGCaccaACGgcGGAUCg -3'
miRNA:   3'- -GUGCUGAUGGCAU-----------GCUGg---UGU--CCUGG- -5'
21331 3' -53.2 NC_004778.3 + 32626 0.69 0.892629
Target:  5'- cCACGACcGCUGgugcaaagGCGACaCGCAGcGGCUg -3'
miRNA:   3'- -GUGCUGaUGGCa-------UGCUG-GUGUC-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.