miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21332 3' -54.8 NC_004778.3 + 76639 0.66 0.913303
Target:  5'- -gGCGGCCGgAAcgGC-CGCUCGGUaauugGCg -3'
miRNA:   3'- caCGUCGGCgUU--UGuGCGGGUCAa----CG- -5'
21332 3' -54.8 NC_004778.3 + 51248 0.66 0.913303
Target:  5'- uUGCAGCCuc-GACAUGCCCGc--GCa -3'
miRNA:   3'- cACGUCGGcguUUGUGCGGGUcaaCG- -5'
21332 3' -54.8 NC_004778.3 + 126978 0.66 0.913303
Target:  5'- -aGCAGCuUGUAAGuuacCACGCCCAcg-GCg -3'
miRNA:   3'- caCGUCG-GCGUUU----GUGCGGGUcaaCG- -5'
21332 3' -54.8 NC_004778.3 + 107506 0.66 0.909608
Target:  5'- aUGC-GCCGCAuaagacuuagcguCACGCCCAauuaUGCa -3'
miRNA:   3'- cACGuCGGCGUuu-----------GUGCGGGUca--ACG- -5'
21332 3' -54.8 NC_004778.3 + 38153 0.66 0.909608
Target:  5'- cUGC-GCCGCucGACaccuccacgcuacccGCGCCUAGUcGCa -3'
miRNA:   3'- cACGuCGGCGu-UUG---------------UGCGGGUCAaCG- -5'
21332 3' -54.8 NC_004778.3 + 30964 0.66 0.907094
Target:  5'- -aGCGGCCGguCGAGC-UGCCCcGUaGCg -3'
miRNA:   3'- caCGUCGGC--GUUUGuGCGGGuCAaCG- -5'
21332 3' -54.8 NC_004778.3 + 2933 0.66 0.907094
Target:  5'- uGUGCGGCUGCAGAUACaccgGCCUuuuaacaaAGcUGUu -3'
miRNA:   3'- -CACGUCGGCGUUUGUG----CGGG--------UCaACG- -5'
21332 3' -54.8 NC_004778.3 + 86314 0.66 0.907094
Target:  5'- -aGCAGgCGUucAACGCGCuCCAGUa-- -3'
miRNA:   3'- caCGUCgGCGu-UUGUGCG-GGUCAacg -5'
21332 3' -54.8 NC_004778.3 + 58160 0.66 0.900635
Target:  5'- -cGCAGUgGCAu--GCGCUC-GUUGCg -3'
miRNA:   3'- caCGUCGgCGUuugUGCGGGuCAACG- -5'
21332 3' -54.8 NC_004778.3 + 98731 0.66 0.900635
Target:  5'- -cGCGGCCGC-AGCGUGCUUcguGUUGUa -3'
miRNA:   3'- caCGUCGGCGuUUGUGCGGGu--CAACG- -5'
21332 3' -54.8 NC_004778.3 + 94784 0.66 0.900635
Target:  5'- uGUGCAGuuGCcuGCG-GCCCGGgcucggacGCa -3'
miRNA:   3'- -CACGUCggCGuuUGUgCGGGUCaa------CG- -5'
21332 3' -54.8 NC_004778.3 + 20590 0.66 0.900635
Target:  5'- cGUGCAGuuGCccAAGCGCagaCC-GUUGCg -3'
miRNA:   3'- -CACGUCggCG--UUUGUGcg-GGuCAACG- -5'
21332 3' -54.8 NC_004778.3 + 80608 0.66 0.900635
Target:  5'- -gGUAGUCGUGAGCACGUggcaCAuucGUUGCg -3'
miRNA:   3'- caCGUCGGCGUUUGUGCGg---GU---CAACG- -5'
21332 3' -54.8 NC_004778.3 + 70476 0.66 0.893929
Target:  5'- aGUGUAGCCuGCGcGACGCGUaucaCAuUUGCg -3'
miRNA:   3'- -CACGUCGG-CGU-UUGUGCGg---GUcAACG- -5'
21332 3' -54.8 NC_004778.3 + 107620 0.66 0.893929
Target:  5'- -aGCGGCaaauuGaCAAACGCGCUCAGUa-- -3'
miRNA:   3'- caCGUCGg----C-GUUUGUGCGGGUCAacg -5'
21332 3' -54.8 NC_004778.3 + 71208 0.66 0.893929
Target:  5'- uGUGCAGCgGCuGGACGCGgCCuc--GCg -3'
miRNA:   3'- -CACGUCGgCG-UUUGUGCgGGucaaCG- -5'
21332 3' -54.8 NC_004778.3 + 101728 0.66 0.893929
Target:  5'- -cGCGGuuGCAAACGCGUugCCug--GCa -3'
miRNA:   3'- caCGUCggCGUUUGUGCG--GGucaaCG- -5'
21332 3' -54.8 NC_004778.3 + 94995 0.66 0.893245
Target:  5'- cGUGCGGCgCGCAAcccaccgGCACGUugcaguCCucguacauguugAGUUGCg -3'
miRNA:   3'- -CACGUCG-GCGUU-------UGUGCG------GG------------UCAACG- -5'
21332 3' -54.8 NC_004778.3 + 43377 0.66 0.886979
Target:  5'- gGUGUuGCCGC-AGCACGCgUAcGUuuUGCg -3'
miRNA:   3'- -CACGuCGGCGuUUGUGCGgGU-CA--ACG- -5'
21332 3' -54.8 NC_004778.3 + 8173 0.66 0.886979
Target:  5'- -aGCAGCCccuucgaAAACGcCGCgCAGUUGUa -3'
miRNA:   3'- caCGUCGGcg-----UUUGU-GCGgGUCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.