miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21332 5' -54.1 NC_004778.3 + 108422 0.66 0.902111
Target:  5'- cGGCGcagGUGGACGCgCUggUGCGCCg---- -3'
miRNA:   3'- uUCGU---UACCUGCG-GA--GCGCGGaauaa -5'
21332 5' -54.1 NC_004778.3 + 57795 0.66 0.880963
Target:  5'- cAAGCGAcaugggggacaUGGugGCCaCGCGCCc---- -3'
miRNA:   3'- -UUCGUU-----------ACCugCGGaGCGCGGaauaa -5'
21332 5' -54.1 NC_004778.3 + 118961 0.67 0.873416
Target:  5'- cAGCGucuuauUGGGCGCCguuccCGCGCCcgAUUu -3'
miRNA:   3'- uUCGUu-----ACCUGCGGa----GCGCGGaaUAA- -5'
21332 5' -54.1 NC_004778.3 + 36468 0.67 0.865629
Target:  5'- -uGUggUGGGCGCCaccaCGCGCUUg--- -3'
miRNA:   3'- uuCGuuACCUGCGGa---GCGCGGAauaa -5'
21332 5' -54.1 NC_004778.3 + 8020 0.67 0.865629
Target:  5'- aAGGUAaacGUGGGCGCCacCGCGCUUa--- -3'
miRNA:   3'- -UUCGU---UACCUGCGGa-GCGCGGAauaa -5'
21332 5' -54.1 NC_004778.3 + 41028 0.69 0.757354
Target:  5'- cGGCAauGUGGACGCCgaaaagcacauuaacCGCGCCa---- -3'
miRNA:   3'- uUCGU--UACCUGCGGa--------------GCGCGGaauaa -5'
21332 5' -54.1 NC_004778.3 + 38659 0.7 0.715154
Target:  5'- aAGGC-AUGGACGCCgaaCGCGUCgcGUUa -3'
miRNA:   3'- -UUCGuUACCUGCGGa--GCGCGGaaUAA- -5'
21332 5' -54.1 NC_004778.3 + 16677 0.7 0.704633
Target:  5'- uGGgGAUGGGCGCUgugagCGUGCUUUGUg -3'
miRNA:   3'- uUCgUUACCUGCGGa----GCGCGGAAUAa -5'
21332 5' -54.1 NC_004778.3 + 34778 0.72 0.597364
Target:  5'- -uGCGGUGGAUGCgguCUUGCGCCUg--- -3'
miRNA:   3'- uuCGUUACCUGCG---GAGCGCGGAauaa -5'
21332 5' -54.1 NC_004778.3 + 65282 0.73 0.533745
Target:  5'- -cGUGAUGGACGCCcacCGCGCCa---- -3'
miRNA:   3'- uuCGUUACCUGCGGa--GCGCGGaauaa -5'
21332 5' -54.1 NC_004778.3 + 81000 1.02 0.007197
Target:  5'- uAAGCAAUGGACGCCUCGCGCCUUAUUc -3'
miRNA:   3'- -UUCGUUACCUGCGGAGCGCGGAAUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.