miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21333 3' -54.5 NC_004778.3 + 21271 0.66 0.901794
Target:  5'- -gGCACGUCgGCGaucUGgGCAACGuCCGCu -3'
miRNA:   3'- agCGUGUAG-CGU---ACgCGUUGUcGGUG- -5'
21333 3' -54.5 NC_004778.3 + 52609 0.66 0.901794
Target:  5'- gUCGCGCGauauggcaaaaUCGCGcgGCG-AAUAGUCGCg -3'
miRNA:   3'- -AGCGUGU-----------AGCGUa-CGCgUUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 106617 0.66 0.901794
Target:  5'- gUUGCGCGUuuUGCGcGCGCAGCGcGCUcaGCg -3'
miRNA:   3'- -AGCGUGUA--GCGUaCGCGUUGU-CGG--UG- -5'
21333 3' -54.5 NC_004778.3 + 101464 0.66 0.895106
Target:  5'- aUGCGCGUCaagGUGUGCGaugagGACGGCUGCu -3'
miRNA:   3'- aGCGUGUAG---CGUACGCg----UUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 95561 0.66 0.895106
Target:  5'- gCGCGCGUCGCuaaGCuGCGACGcGCUu- -3'
miRNA:   3'- aGCGUGUAGCGua-CG-CGUUGU-CGGug -5'
21333 3' -54.5 NC_004778.3 + 1767 0.66 0.895106
Target:  5'- -aGCGCAaCGUguguuugaaggaGUGCGCGGacgGGCCGCa -3'
miRNA:   3'- agCGUGUaGCG------------UACGCGUUg--UCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 44003 0.66 0.895106
Target:  5'- -gGCACcuGUUGCc-GCGUcgGACGGCCGCg -3'
miRNA:   3'- agCGUG--UAGCGuaCGCG--UUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 95165 0.66 0.895106
Target:  5'- gCGCACcugccCGUcgGCGC-ACGGCgCGCg -3'
miRNA:   3'- aGCGUGua---GCGuaCGCGuUGUCG-GUG- -5'
21333 3' -54.5 NC_004778.3 + 106631 0.66 0.895106
Target:  5'- gUCGCAaa-CGC-UGCGCAGCgAGCUcaACa -3'
miRNA:   3'- -AGCGUguaGCGuACGCGUUG-UCGG--UG- -5'
21333 3' -54.5 NC_004778.3 + 31641 0.66 0.888173
Target:  5'- cCGCGCAUU---UGCGCu-CAGCCAa -3'
miRNA:   3'- aGCGUGUAGcguACGCGuuGUCGGUg -5'
21333 3' -54.5 NC_004778.3 + 95459 0.66 0.888173
Target:  5'- cCGCAacgcgaGCAUGUGCAcauugaACGGCUGCa -3'
miRNA:   3'- aGCGUguag--CGUACGCGU------UGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 17360 0.66 0.888173
Target:  5'- cUCGCGCAccgccgucUCGUAgauuuugGCGUccguGCAGUCGCg -3'
miRNA:   3'- -AGCGUGU--------AGCGUa------CGCGu---UGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 43536 0.66 0.888173
Target:  5'- cCGCaaaACGUaCGCGUGCugcgGCAACA-CCACg -3'
miRNA:   3'- aGCG---UGUA-GCGUACG----CGUUGUcGGUG- -5'
21333 3' -54.5 NC_004778.3 + 71043 0.66 0.888173
Target:  5'- gCGUACGuuUCGCGagGcCGCGucCAGCCGCu -3'
miRNA:   3'- aGCGUGU--AGCGUa-C-GCGUu-GUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 45574 0.66 0.887466
Target:  5'- gCGCACGUagcgcuccuccagCGCcugGCGCGccuucugcAUAGCCGCg -3'
miRNA:   3'- aGCGUGUA-------------GCGua-CGCGU--------UGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 62912 0.66 0.887466
Target:  5'- gUCGCGCAuggacagUCGCA-GCaGUAGC-GCCAUg -3'
miRNA:   3'- -AGCGUGU-------AGCGUaCG-CGUUGuCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 107677 0.67 0.880997
Target:  5'- gUCGCGCGaCGaaaccuUGCGCGuggaGGCCGCc -3'
miRNA:   3'- -AGCGUGUaGCgu----ACGCGUug--UCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 39113 0.67 0.880997
Target:  5'- aCGCAaGUaCGUgGUGCGCGGCGGCgACc -3'
miRNA:   3'- aGCGUgUA-GCG-UACGCGUUGUCGgUG- -5'
21333 3' -54.5 NC_004778.3 + 42945 0.67 0.880997
Target:  5'- cCGCcgACAaCGCGUGCGCcauguuuaaAAUAGCgCGCa -3'
miRNA:   3'- aGCG--UGUaGCGUACGCG---------UUGUCG-GUG- -5'
21333 3' -54.5 NC_004778.3 + 34460 0.67 0.873585
Target:  5'- cUGCGCGUCGaggaGCGCAccGCGGUCGa -3'
miRNA:   3'- aGCGUGUAGCgua-CGCGU--UGUCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.